Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   WKI52_RS12935 Genome accession   NZ_CP149646
Coordinates   2484522..2485118 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ06     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2479522..2490118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI52_RS12905 (WKI52_12905) - 2479736..2480191 (+) 456 WP_014417614.1 flavodoxin -
  WKI52_RS12910 (WKI52_12910) dapD 2480273..2480983 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  WKI52_RS12915 (WKI52_12915) - 2481054..2482178 (+) 1125 WP_063636606.1 N-acetyldiaminopimelate deacetylase -
  WKI52_RS12920 (WKI52_12920) - 2482239..2482484 (+) 246 WP_339072934.1 YkuS family protein -
  WKI52_RS12925 (WKI52_12925) - 2482518..2483324 (-) 807 WP_025649509.1 mechanosensitive ion channel family protein -
  WKI52_RS12930 (WKI52_12930) - 2483612..2484070 (+) 459 WP_025649508.1 TlpA disulfide reductase family protein -
  WKI52_RS12935 (WKI52_12935) rok 2484522..2485118 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  WKI52_RS12940 (WKI52_12940) - 2485139..2486131 (-) 993 WP_014417619.1 hypothetical protein -
  WKI52_RS12945 (WKI52_12945) - 2486277..2486879 (+) 603 WP_025649507.1 molybdenum cofactor guanylyltransferase -
  WKI52_RS12950 (WKI52_12950) - 2486931..2487950 (+) 1020 WP_063636608.1 molybdopterin-synthase adenylyltransferase MoeB -
  WKI52_RS12955 (WKI52_12955) glp 2487968..2489260 (+) 1293 WP_063636609.1 gephyrin-like molybdotransferase Glp -
  WKI52_RS12960 (WKI52_12960) mobB 2489221..2489742 (+) 522 WP_063636610.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=960218 WKI52_RS12935 WP_003154591.1 2484522..2485118(+) (rok) [Bacillus velezensis strain MJ06]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=960218 WKI52_RS12935 WP_003154591.1 2484522..2485118(+) (rok) [Bacillus velezensis strain MJ06]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843