Detailed information NTG0960202

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3M0_RS08190
• Genome accession: NZ_CP173532
• Coordinates: 1487184..1488176 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 98209
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1482184..1493176

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3M0_RS08170 (ACI3M0_08165)	otnK	1482959..1484221 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
ACI3M0_RS08175 (ACI3M0_08170)	ygbL	1484218..1484856 (+)	639	WP_001278994.1	aldolase	-
ACI3M0_RS08180 (ACI3M0_08175)	ygbM	1484861..1485637 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACI3M0_RS08185 (ACI3M0_08180)	ygbN	1485726..1487090 (+)	1365	WP_000104456.1	GntP family transporter	-
ACI3M0_RS08190 (ACI3M0_08185)	rpoS	1487184..1488176 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACI3M0_RS08195 (ACI3M0_08190)	nlpD	1488239..1489333 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACI3M0_RS08200 (ACI3M0_08195)	pcm	1489518..1490144 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI3M0_RS08205 (ACI3M0_08200)	surE	1490138..1490899 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
ACI3M0_RS08210 (ACI3M0_08205)	truD	1490880..1491929 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACI3M0_RS08215 (ACI3M0_08210)	ispF	1491926..1492405 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3M0_RS08220 (ACI3M0_08215)	ispD	1492405..1493115 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=960202 ACI3M0_RS08190 WP_000081550.1 1487184..1488176(-) (rpoS) [Escherichia coli strain 98209]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=960202 ACI3M0_RS08190 WP_000081550.1 1487184..1488176(-) (rpoS) [Escherichia coli strain 98209]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715