Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   WKI52_RS06900 Genome accession   NZ_CP149646
Coordinates   1335597..1336034 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ06     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1330597..1341034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI52_RS06875 (WKI52_06875) - 1331617..1332753 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  WKI52_RS06880 (WKI52_06880) - 1332768..1333202 (+) 435 WP_014416871.1 RDD family protein -
  WKI52_RS06885 (WKI52_06885) - 1333274..1333597 (+) 324 WP_007409357.1 YckD family protein -
  WKI52_RS06890 (WKI52_06890) - 1333701..1335137 (+) 1437 WP_104843069.1 family 1 glycosylhydrolase -
  WKI52_RS06895 (WKI52_06895) nin/comJ 1335178..1335576 (-) 399 WP_017419379.1 competence protein ComJ Regulator
  WKI52_RS06900 (WKI52_06900) nucA/comI 1335597..1336034 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  WKI52_RS06905 (WKI52_06905) hxlB 1336365..1336922 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  WKI52_RS06910 (WKI52_06910) hxlA 1336919..1337554 (-) 636 WP_123117601.1 3-hexulose-6-phosphate synthase -
  WKI52_RS06915 (WKI52_06915) - 1337786..1338148 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=960196 WKI52_RS06900 WP_003156588.1 1335597..1336034(-) (nucA/comI) [Bacillus velezensis strain MJ06]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=960196 WKI52_RS06900 WP_003156588.1 1335597..1336034(-) (nucA/comI) [Bacillus velezensis strain MJ06]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641