Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACI3MW_RS16650 Genome accession   NZ_CP173528
Coordinates   3240440..3241432 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain 98210     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3235440..3246432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MW_RS16640 (ACI3MW_16630) yieP 3238332..3239024 (+) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -
  ACI3MW_RS16645 (ACI3MW_16635) mdtD 3239047..3240474 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ACI3MW_RS16650 (ACI3MW_16640) cytR 3240440..3241432 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACI3MW_RS16655 (ACI3MW_16645) rbsK 3241436..3242365 (-) 930 WP_021523308.1 ribokinase -
  ACI3MW_RS16660 (ACI3MW_16650) rbsB 3242494..3243381 (-) 888 Protein_3098 ribose ABC transporter substrate-binding protein RbsB -
  ACI3MW_RS16665 (ACI3MW_16655) rbsC 3243406..3244371 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACI3MW_RS16670 (ACI3MW_16660) rbsA 3244376..3245881 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ACI3MW_RS16675 (ACI3MW_16665) rbsD 3245889..3246308 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=960143 ACI3MW_RS16650 WP_000224470.1 3240440..3241432(-) (cytR) [Escherichia coli strain 98210]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=960143 ACI3MW_RS16650 WP_000224470.1 3240440..3241432(-) (cytR) [Escherichia coli strain 98210]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACTGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364