Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   WIN67_RS09115 Genome accession   NZ_CP149586
Coordinates   1996921..1999152 (+) Length   743 a.a.
NCBI ID   WP_123392183.1    Uniprot ID   -
Organism   Pseudomonas idahonensis strain BIM B-1906     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1991921..2004152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIN67_RS09090 (WIN67_09090) - 1993046..1993705 (+) 660 WP_110595193.1 transglutaminase family protein -
  WIN67_RS09095 (WIN67_09095) - 1993748..1994371 (+) 624 WP_273924412.1 glutathione S-transferase -
  WIN67_RS09100 (WIN67_09100) - 1994504..1995436 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  WIN67_RS09105 (WIN67_09105) - 1995433..1996212 (+) 780 WP_102863930.1 ABC transporter permease -
  WIN67_RS09110 (WIN67_09110) - 1996266..1996781 (-) 516 WP_102863929.1 DUF2062 domain-containing protein -
  WIN67_RS09115 (WIN67_09115) comA 1996921..1999152 (+) 2232 WP_123392183.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WIN67_RS09120 (WIN67_09120) exbB 1999255..1999890 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WIN67_RS09125 (WIN67_09125) - 1999887..2000315 (+) 429 WP_102863926.1 biopolymer transporter ExbD -
  WIN67_RS09130 (WIN67_09130) lpxK 2000315..2001325 (+) 1011 WP_102878921.1 tetraacyldisaccharide 4'-kinase -
  WIN67_RS09135 (WIN67_09135) - 2001349..2001534 (+) 186 WP_011060103.1 Trm112 family protein -
  WIN67_RS09140 (WIN67_09140) kdsB 2001531..2002295 (+) 765 WP_170003433.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WIN67_RS09145 (WIN67_09145) - 2002295..2002759 (+) 465 WP_110595198.1 low molecular weight protein-tyrosine-phosphatase -
  WIN67_RS09150 (WIN67_09150) murB 2002756..2003775 (+) 1020 WP_102878923.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81366.77 Da        Isoelectric Point: 10.6603

>NTDB_id=960072 WIN67_RS09115 WP_123392183.1 1996921..1999152(+) (comA) [Pseudomonas idahonensis strain BIM B-1906]
MVTGMLALAAGLLALGFMPVLPPGWLLLLMAIGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDRLPQSLDGQTRWLEG
RVVGLPEPGAGVVRFELKDAQSRRERLPRRIRLAWHGGPPVNSGERWRLAVKLRRPAGLLNLHGFDYEAWLLARRIGATG
TVKDGQLLAPARQAWRDGLRQRLLAVEAHGRAAGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAAVIYLA
VAGLARYGLWPARWPWLPWACALAFVGALGYGLLAGFDVPVQRACVMVALVLLWRWRFRHLRAWWPLLLALNAVLLFEPL
ASLQPGFWLSYAAVAVLIFTFAGRLGSWRWWQSWTRAQWLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGAMAGLWPAWVAPLIPLWVWGLSSLGALLLLLPKGVPLRVLGWPLLLLAV
WPPQDPVPEGEVEIWQLDVGQGLSFILRTRDHAMLYDAGARVADFDLGERVVLPTLHKLGIRRLDLMLLSHADNDHAGGA
LAVQRGIPVSQVRSGEPEALPAALQSASCDSGLSWHWNGARFTLWQWTGAADGNQASCVLLVEAGGERLLLTGDIDVHAE
RALLGSPLAVRIHWLQAPHHGSRTSSSMALLRRLTPKAVLISRGQGNAFGHPHPQVVARYRQLGMVIHDSAEQGALKLRL
GTFGQPESLRQQRRFWRDWPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=960072 WIN67_RS09115 WP_123392183.1 1996921..1999152(+) (comA) [Pseudomonas idahonensis strain BIM B-1906]
ATGGTTACAGGGATGCTGGCCCTGGCCGCAGGACTGCTGGCGCTGGGTTTCATGCCGGTGCTGCCGCCCGGCTGGTTGTT
GCTGCTGATGGCGATAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTTTGGCCT
GGGCCTGTGCATCCGGGCAATGGGCGCTGGATGATCGCCTGCCTCAGTCCCTGGATGGGCAAACCCGCTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGAACCGGGGGCGGGCGTGGTGCGCTTTGAGCTCAAGGATGCCCAGTCCCGACGAGAGCGCCT
GCCGCGGCGAATTCGCCTGGCCTGGCACGGTGGGCCACCTGTCAATAGCGGCGAACGCTGGCGCCTGGCGGTCAAGCTGC
GGCGTCCTGCCGGTCTGCTCAATCTTCACGGTTTCGATTACGAAGCCTGGCTGCTGGCCCGGCGCATTGGGGCCACCGGC
ACAGTCAAGGATGGGCAACTGCTGGCGCCGGCACGCCAAGCCTGGCGTGACGGTCTGCGCCAGCGTTTACTCGCGGTCGA
GGCCCACGGCCGCGCCGCAGGCCTGGCGGCATTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGATTGGCAACTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATATCCGGACAGCACATCAGTCTGCTGGCCGCAGTGATCTACCTTGCA
GTGGCAGGGCTGGCTCGTTACGGGCTTTGGCCCGCGCGTTGGCCCTGGCTGCCCTGGGCCTGCGCCCTGGCCTTTGTCGG
GGCGCTGGGCTACGGCCTGCTGGCAGGGTTCGATGTGCCGGTACAGAGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTCT
GGCGCTGGCGCTTTCGTCACCTGCGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGTTCGAGCCCCTG
GCCAGCTTGCAGCCAGGGTTCTGGCTGTCCTATGCCGCGGTGGCGGTGCTCATCTTCACCTTTGCCGGGCGCCTGGGTTC
CTGGCGTTGGTGGCAGAGTTGGACCCGCGCCCAGTGGTTGATGGGTATTGGCCTGTTGCCACCCTTGCTGGCCCTTGGCT
TGCCCATCAGTCTCAGTGGTCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTCCTGCCCCCGGCCTTG
CTGGGCTGTCTGTTGTTGCCTGTGCCTTATGTGGGTGAAGGGCTGTTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGCTTACTGGGGGCGATGGCCGGATTATGGCCAGCCTGGGTGGCGCCGTTGATCCCCCTTTGGGTTTGGGGCCTGAGCA
GCCTGGGCGCGCTGTTGTTGCTGTTGCCCAAGGGCGTGCCACTGCGGGTGCTGGGTTGGCCGCTGTTGCTGTTGGCCGTC
TGGCCTCCCCAGGACCCGGTACCCGAGGGCGAGGTGGAGATCTGGCAGTTGGATGTGGGGCAGGGGTTGTCGTTCATTCT
GCGTACCCGTGATCACGCGATGTTGTATGACGCCGGTGCGCGAGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCATAAACTTGGCATTCGACGGTTGGACTTGATGCTGCTCAGCCACGCCGATAACGATCATGCCGGAGGCGCC
CTGGCAGTCCAGCGCGGGATACCGGTGAGCCAGGTGCGCAGCGGCGAGCCTGAGGCCTTGCCGGCTGCCCTGCAGTCGGC
CTCCTGTGATAGCGGGCTGAGCTGGCACTGGAATGGCGCCCGCTTCACGCTGTGGCAGTGGACGGGGGCGGCAGACGGCA
ACCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCACCGGCGATATCGATGTCCATGCTGAG
CGGGCTTTGCTCGGCAGTCCGCTGGCGGTTCGCATTCACTGGTTGCAGGCGCCCCATCATGGCAGCCGTACCTCATCGTC
CATGGCCTTGCTCCGGCGGTTGACGCCGAAGGCGGTGCTGATTTCCCGGGGGCAGGGCAATGCCTTTGGCCATCCTCATC
CCCAGGTGGTGGCGCGCTACCGGCAATTGGGCATGGTGATTCATGACAGTGCCGAGCAAGGCGCACTGAAGCTGCGGCTG
GGGACTTTCGGCCAGCCTGAAAGCCTGCGCCAACAGCGGCGCTTCTGGCGCGACTGGCCAGCAATGCCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.877

96.501

0.616