Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WHL95_RS00060 Genome accession   NZ_CP149578
Coordinates   14650..15228 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Pseudomonas aeruginosa isolate FELIX_MS413     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9650..20228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL95_RS00040 glyS 9868..11922 (-) 2055 WP_003114646.1 glycine--tRNA ligase subunit beta -
  WHL95_RS00045 glyQ 11922..12869 (-) 948 WP_003097276.1 glycine--tRNA ligase subunit alpha -
  WHL95_RS00050 - 12974..13525 (+) 552 WP_003097280.1 DNA-3-methyladenine glycosylase I -
  WHL95_RS00055 - 13669..14556 (+) 888 WP_003097282.1 lysophospholipid acyltransferase -
  WHL95_RS00060 comK 14650..15228 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WHL95_RS00065 - 15265..15486 (+) 222 WP_339078992.1 PilZ domain-containing protein -
  WHL95_RS00070 - 15633..16286 (+) 654 WP_003097286.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  WHL95_RS00075 - 16348..16620 (-) 273 WP_003114644.1 hypothetical protein -
  WHL95_RS00080 - 16913..17230 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  WHL95_RS00085 trkA 17379..18752 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  WHL95_RS00090 rsmB 18780..20084 (-) 1305 WP_003114643.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=960011 WHL95_RS00060 WP_003245329.1 14650..15228(+) (comK) [Pseudomonas aeruginosa isolate FELIX_MS413]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=960011 WHL95_RS00060 WP_003245329.1 14650..15228(+) (comK) [Pseudomonas aeruginosa isolate FELIX_MS413]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1