Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   WHL52_RS15230 Genome accession   NZ_CP149576
Coordinates   2859648..2860394 (-) Length   248 a.a.
NCBI ID   WP_010886586.1    Uniprot ID   A0AAE2SM29
Organism   Bacillus subtilis strain DSM 10     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2854648..2865394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS15205 mreC 2855054..2855926 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  WHL52_RS15210 mreB 2855957..2856970 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  WHL52_RS15215 radC 2857062..2857757 (-) 696 WP_003246034.1 DNA repair protein RadC -
  WHL52_RS15220 maf 2857794..2858363 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  WHL52_RS15225 spoIIB 2858516..2859514 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  WHL52_RS15230 comC 2859648..2860394 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  WHL52_RS15235 folC 2860534..2861826 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  WHL52_RS15240 valS 2861886..2864528 (-) 2643 WP_004398606.1 valine--tRNA ligase -
  WHL52_RS15245 - 2864976..2865167 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26435.04 Da        Isoelectric Point: 9.7944

>NTDB_id=959987 WHL52_RS15230 WP_010886586.1 2859648..2860394(-) (comC) [Bacillus subtilis strain DSM 10]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=959987 WHL52_RS15230 WP_010886586.1 2859648..2860394(-) (comC) [Bacillus subtilis strain DSM 10]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

100

100

1