Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WHL52_RS13690 Genome accession   NZ_CP149576
Coordinates   2604167..2604934 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain DSM 10     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2599167..2609934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS13670 ppsR 2599342..2600154 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  WHL52_RS13675 ccpN 2600180..2600818 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  WHL52_RS13680 glyS 2600951..2602990 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  WHL52_RS13685 glyQ 2602983..2603870 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  WHL52_RS13690 recO 2604167..2604934 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  WHL52_RS13695 yqzL 2604971..2605114 (-) 144 WP_003230053.1 YqzL family protein -
  WHL52_RS13700 era 2605262..2606167 (-) 906 WP_003230051.1 GTPase Era -
  WHL52_RS13705 cdd 2606148..2606558 (-) 411 WP_003230049.1 cytidine deaminase -
  WHL52_RS13710 unpK 2606677..2607048 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  WHL52_RS13715 ybeY 2607029..2607502 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  WHL52_RS13720 pgpH 2607503..2609638 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=959979 WHL52_RS13690 WP_003230055.1 2604167..2604934(-) (recO) [Bacillus subtilis strain DSM 10]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=959979 WHL52_RS13690 WP_003230055.1 2604167..2604934(-) (recO) [Bacillus subtilis strain DSM 10]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1