Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WHL52_RS12175 Genome accession   NZ_CP149576
Coordinates   2336030..2336650 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2331030..2341650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS12135 ypqE 2332161..2332667 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WHL52_RS12140 ypqA 2332805..2333224 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WHL52_RS12145 yppG 2333245..2333622 (-) 378 WP_004398696.1 YppG family protein -
  WHL52_RS12150 yppF 2333810..2333998 (+) 189 WP_003230690.1 YppF family protein -
  WHL52_RS12155 yppE 2334037..2334408 (-) 372 WP_003246080.1 YppE family protein -
  WHL52_RS12160 yppD 2334454..2334699 (-) 246 WP_004398488.1 YppD family protein -
  WHL52_RS12165 sspM 2334898..2335002 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WHL52_RS12170 yppC 2335027..2335989 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  WHL52_RS12175 recU 2336030..2336650 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WHL52_RS12180 ponA 2336672..2339416 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  WHL52_RS12185 ypoC 2339492..2339986 (-) 495 WP_009967579.1 YpoC family protein -
  WHL52_RS12190 nth 2339983..2340642 (-) 660 WP_009967580.1 endonuclease III -
  WHL52_RS12195 dnaD 2340661..2341359 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=959967 WHL52_RS12175 WP_004399067.1 2336030..2336650(+) (recU) [Bacillus subtilis strain DSM 10]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=959967 WHL52_RS12175 WP_004399067.1 2336030..2336650(+) (recU) [Bacillus subtilis strain DSM 10]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1