Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WHL52_RS07970 Genome accession   NZ_CP149576
Coordinates   1517462..1517740 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain DSM 10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512462..1522740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS07950 - 1513649..1514560 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  WHL52_RS07955 ampS 1514594..1515826 (-) 1233 WP_003232341.1 aminopeptidase -
  WHL52_RS07960 ykpC 1515936..1516070 (-) 135 WP_003238865.1 protein YkpC -
  WHL52_RS07965 mreBH 1516171..1517178 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WHL52_RS07970 abrB 1517462..1517740 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WHL52_RS07975 kinC 1517930..1519216 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WHL52_RS07980 ykqA 1519232..1520065 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  WHL52_RS07985 ktrC 1520128..1520793 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WHL52_RS07990 ade 1520948..1522681 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=959962 WHL52_RS07970 WP_003244728.1 1517462..1517740(+) (abrB) [Bacillus subtilis strain DSM 10]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=959962 WHL52_RS07970 WP_003244728.1 1517462..1517740(+) (abrB) [Bacillus subtilis strain DSM 10]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576