Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WHL52_RS05785 Genome accession   NZ_CP149576
Coordinates   1116702..1117280 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain DSM 10     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111702..1122280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS05765 hemAT 1112213..1113511 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  WHL52_RS05770 yhfW 1113650..1115179 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  WHL52_RS05775 yhxC 1115291..1116148 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  WHL52_RS05780 yhzC 1116176..1116409 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  WHL52_RS05785 comK 1116702..1117280 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WHL52_RS05790 yhxD 1117327..1118226 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  WHL52_RS05795 yhjA 1118443..1118712 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  WHL52_RS05800 yhjB 1118755..1120224 (-) 1470 WP_003233134.1 sodium:solute symporter -
  WHL52_RS05805 yhjC 1120221..1120421 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WHL52_RS05810 - 1120629..1120991 (-) 363 WP_003233132.1 hypothetical protein -
  WHL52_RS05815 yhjE 1121143..1121766 (+) 624 WP_010886465.1 VTT domain-containing protein -
  WHL52_RS05820 lepB 1121768..1122274 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=959948 WHL52_RS05785 WP_003245329.1 1116702..1117280(+) (comK) [Bacillus subtilis strain DSM 10]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=959948 WHL52_RS05785 WP_003245329.1 1116702..1117280(+) (comK) [Bacillus subtilis strain DSM 10]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1