Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACI3MG_RS09195 Genome accession   NZ_CP173493
Coordinates   1840926..1841918 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain 98218     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835926..1846918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MG_RS09170 (ACI3MG_09185) pphB 1837286..1837942 (+) 657 WP_022646027.1 protein-serine/threonine phosphatase -
  ACI3MG_RS09175 (ACI3MG_09190) - 1837983..1838219 (-) 237 WP_000562980.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ACI3MG_RS09180 (ACI3MG_09195) - 1838230..1839657 (-) 1428 WP_000863202.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ACI3MG_RS09185 (ACI3MG_09200) - 1839657..1840251 (-) 595 Protein_1800 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ACI3MG_RS09190 (ACI3MG_09205) - 1840398..1840805 (+) 408 WP_001208067.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI3MG_RS09195 (ACI3MG_09210) rpoS 1840926..1841918 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ACI3MG_RS09200 (ACI3MG_09215) nlpD 1841981..1843075 (-) 1095 WP_306305266.1 murein hydrolase activator NlpD -
  ACI3MG_RS09205 (ACI3MG_09220) pcm 1843260..1843886 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ACI3MG_RS09210 (ACI3MG_09225) surE 1843880..1844641 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ACI3MG_RS09215 (ACI3MG_09230) truD 1844622..1845671 (-) 1050 WP_022646031.1 tRNA pseudouridine(13) synthase TruD -
  ACI3MG_RS09220 (ACI3MG_09235) ispF 1845668..1846147 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACI3MG_RS09225 (ACI3MG_09240) ispD 1846147..1846857 (-) 711 WP_000246131.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=959874 ACI3MG_RS09195 WP_000081550.1 1840926..1841918(-) (rpoS) [Escherichia coli strain 98218]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=959874 ACI3MG_RS09195 WP_000081550.1 1840926..1841918(-) (rpoS) [Escherichia coli strain 98218]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715