Detailed information NTG0959787

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3M1_RS05485
• Genome accession: NZ_CP173486
• Coordinates: 1118011..1119003 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 98219
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1113011..1124003

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3M1_RS05455 (ACI3M1_05455)	ispD	1113072..1113782 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACI3M1_RS05460 (ACI3M1_05460)	ispF	1113782..1114261 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3M1_RS05465 (ACI3M1_05465)	truD	1114258..1115307 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACI3M1_RS05470 (ACI3M1_05470)	surE	1115288..1116049 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACI3M1_RS05475 (ACI3M1_05475)	pcm	1116043..1116669 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI3M1_RS05480 (ACI3M1_05480)	nlpD	1116854..1117948 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACI3M1_RS05485 (ACI3M1_05485)	rpoS	1118011..1119003 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACI3M1_RS05490 (ACI3M1_05490)	ygbN	1119097..1120461 (-)	1365	WP_000104441.1	GntP family transporter	-
ACI3M1_RS05495 (ACI3M1_05495)	ygbM	1120550..1121326 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACI3M1_RS05500 (ACI3M1_05500)	ygbL	1121331..1121969 (-)	639	WP_001278994.1	aldolase	-
ACI3M1_RS05505 (ACI3M1_05505)	otnK	1121966..1123228 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=959787 ACI3M1_RS05485 WP_000081550.1 1118011..1119003(+) (rpoS) [Escherichia coli strain 98219]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=959787 ACI3M1_RS05485 WP_000081550.1 1118011..1119003(+) (rpoS) [Escherichia coli strain 98219]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715