Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   WJ038_RS18945 Genome accession   NZ_CP149506
Coordinates   869376..870473 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain EB101     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 864376..875473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ038_RS18930 (WJ038_18965) - 865040..866095 (-) 1056 WP_015313427.1 HlyD family secretion protein -
  WJ038_RS18935 (WJ038_18970) - 866133..866588 (-) 456 WP_025525184.1 MarR family transcriptional regulator -
  WJ038_RS18940 (WJ038_18975) luxQ 866800..869376 (-) 2577 WP_025521028.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  WJ038_RS18945 (WJ038_18980) luxP 869376..870473 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  WJ038_RS18950 (WJ038_18985) - 870825..871145 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  WJ038_RS18955 (WJ038_18990) - 871142..871792 (-) 651 WP_017447360.1 YceH family protein -
  WJ038_RS18960 (WJ038_18995) - 871969..872184 (-) 216 WP_005477197.1 hypothetical protein -
  WJ038_RS18965 (WJ038_19000) - 872512..872826 (+) 315 WP_005453573.1 DUF496 family protein -
  WJ038_RS18970 (WJ038_19005) - 872949..874286 (+) 1338 WP_029803881.1 MATE family efflux transporter -
  WJ038_RS18975 (WJ038_19010) - 874360..875337 (-) 978 WP_015313433.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=959776 WJ038_RS18945 WP_005463467.1 869376..870473(-) (luxP) [Vibrio parahaemolyticus strain EB101]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=959776 WJ038_RS18945 WP_005463467.1 869376..870473(-) (luxP) [Vibrio parahaemolyticus strain EB101]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAGATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCTGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCAGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATTAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644