Detailed information NTG0959756

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WJ038_RS12225
• Genome accession: NZ_CP149505
• Coordinates: 2664588..2665577 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain EB101
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2659588..2670577

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJ038_RS12210 (WJ038_12260)	recA	2660137..2661180 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
WJ038_RS12215 (WJ038_12265)	pncC	2661381..2661863 (-)	483	WP_025795578.1	nicotinamide-nucleotide amidase	-
WJ038_RS12220 (WJ038_12270)	mutS	2661948..2664509 (+)	2562	WP_029804975.1	DNA mismatch repair protein MutS	-
WJ038_RS12225 (WJ038_12275)	rpoS	2664588..2665577 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
WJ038_RS12230 (WJ038_12280)	-	2665668..2666591 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
WJ038_RS12235 (WJ038_12285)	-	2666606..2667232 (-)	627	WP_029804973.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
WJ038_RS12240 (WJ038_12290)	surE	2667232..2668008 (-)	777	WP_029804971.1	5'/3'-nucleotidase SurE	-
WJ038_RS12245 (WJ038_12295)	truD	2668008..2669051 (-)	1044	WP_029804969.1	tRNA pseudouridine(13) synthase TruD	-
WJ038_RS12250 (WJ038_12300)	ispF	2669098..2669574 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WJ038_RS12255 (WJ038_12305)	ispD	2669592..2670296 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=959756 WJ038_RS12225 WP_005478537.1 2664588..2665577(-) (rpoS) [Vibrio parahaemolyticus strain EB101]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=959756 WJ038_RS12225 WP_005478537.1 2664588..2665577(-) (rpoS) [Vibrio parahaemolyticus strain EB101]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGTCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851