Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WJ044_RS07765 Genome accession   NZ_CP149499
Coordinates   1522448..1523056 (-) Length   202 a.a.
NCBI ID   WP_004306521.1    Uniprot ID   A0A5T1MDP2
Organism   Campylobacter jejuni strain CIP 702     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1517448..1528056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ044_RS07740 (WJ044_07740) - 1517607..1518369 (+) 763 Protein_1505 TIGR02757 family protein -
  WJ044_RS07745 (WJ044_07745) - 1518373..1519137 (+) 765 WP_004306514.1 TSUP family transporter -
  WJ044_RS07750 (WJ044_07750) ctsF 1519130..1520311 (-) 1182 WP_004306516.1 type II secretion system F family protein Machinery gene
  WJ044_RS07755 (WJ044_07755) ctsE 1520308..1521867 (-) 1560 WP_016818338.1 GspE/PulE family protein Machinery gene
  WJ044_RS07760 (WJ044_07760) ctsX 1521857..1522444 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  WJ044_RS07765 (WJ044_07765) ctsP 1522448..1523056 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  WJ044_RS07770 (WJ044_07770) ctsD 1523049..1524461 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WJ044_RS07775 (WJ044_07775) ctsR 1524439..1524750 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23703.66 Da        Isoelectric Point: 9.8540

>NTDB_id=959707 WJ044_RS07765 WP_004306521.1 1522448..1523056(-) (ctsP) [Campylobacter jejuni strain CIP 702]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESVRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFELKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEHILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=959707 WJ044_RS07765 WP_004306521.1 1522448..1523056(-) (ctsP) [Campylobacter jejuni strain CIP 702]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGTTAGAAAGTGTCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTGAATTGAAAAATATTAGTCTTT
TAGAGCTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTGCAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGCATATTTTAAAGCTTAGTGCTTTAGAGAATGGTTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1MDP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

98.02

100

0.98