Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WJ044_RS03270 Genome accession   NZ_CP149499
Coordinates   622647..623084 (+) Length   145 a.a.
NCBI ID   WP_002883208.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CIP 702     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 617647..628084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ044_RS03240 (WJ044_03240) - 618324..618488 (+) 165 Protein_626 potassium-transporting ATPase subunit C -
  WJ044_RS03245 (WJ044_03245) - 618503..619054 (+) 552 WP_236017573.1 hypothetical protein -
  WJ044_RS03250 (WJ044_03250) - 619315..619959 (+) 645 WP_236017572.1 DUF4118 domain-containing protein -
  WJ044_RS03255 (WJ044_03255) uvrB 620061..622034 (-) 1974 WP_002883210.1 excinuclease ABC subunit UvrB -
  WJ044_RS03260 (WJ044_03260) - 622188..622418 (+) 231 WP_002852327.1 hypothetical protein -
  WJ044_RS03265 (WJ044_03265) - 622408..622650 (+) 243 WP_002883209.1 hypothetical protein -
  WJ044_RS03270 (WJ044_03270) Cj0683 622647..623084 (+) 438 WP_002883208.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WJ044_RS03275 (WJ044_03275) priA 623066..624919 (+) 1854 WP_002883207.1 primosomal protein N' -
  WJ044_RS03280 (WJ044_03280) cipA 624929..626324 (-) 1396 Protein_634 DUF2972 domain-containing protein -
  WJ044_RS03285 (WJ044_03285) ispG 626470..627543 (+) 1074 WP_002883372.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16738.73 Da        Isoelectric Point: 8.0993

>NTDB_id=959691 WJ044_RS03270 WP_002883208.1 622647..623084(+) (Cj0683) [Campylobacter jejuni strain CIP 702]
MSKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=959691 WJ044_RS03270 WP_002883208.1 622647..623084(+) (Cj0683) [Campylobacter jejuni strain CIP 702]
ATGAGTAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTGTCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGTTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993