Detailed information NTG0959671

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: WJ046_RS01985
• Genome accession: NZ_CP149498
• Coordinates: 371098..372489 (+)
• Length: 463 a.a.
• NCBI ID: WP_074692605.1
• Uniprot ID: -
• Organism: Campylobacter lari subsp. lari strain NCTC 11352 [WRI 3034/77]
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 366098..377489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJ046_RS01970 (WJ046_01960)	-	366483..367127 (+)	645	WP_012661128.1	HAD family hydrolase	-
WJ046_RS01975 (WJ046_01965)	nifJ	367245..370799 (+)	3555	WP_070255998.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
WJ046_RS01980 (WJ046_01970)	-	370866..371126 (+)	261	WP_143297314.1	hypothetical protein	-
WJ046_RS01985 (WJ046_01975)	ctsD	371098..372489 (+)	1392	WP_074692605.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
WJ046_RS01990 (WJ046_01980)	-	372470..372799 (+)	330	WP_012661132.1	hypothetical protein	-
WJ046_RS01995 (WJ046_01985)	-	372792..374306 (+)	1515	WP_074692603.1	GspE/PulE family protein	-
WJ046_RS02000 (WJ046_01990)	-	374303..375463 (+)	1161	WP_074692601.1	type II secretion system F family protein	-
WJ046_RS02005 (WJ046_01995)	-	375460..376212 (-)	753	WP_074692600.1	TSUP family transporter	-
WJ046_RS02010 (WJ046_02000)	-	376197..376946 (-)	750	WP_074692598.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52523.36 Da
• Isoelectric Point: 7.9605

>NTDB_id=959671 WJ046_RS01985 WP_074692605.1 371098..372489(+) (ctsD) [Campylobacter lari subsp. lari strain NCTC 11352 [WRI 3034/77]]
MKKIIFLFISILSFTNIFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIA
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=959671 WJ046_RS01985 WP_074692605.1 371098..372489(+) (ctsD) [Campylobacter lari subsp. lari strain NCTC 11352 [WRI 3034/77]]
ATGAAAAAAATAATATTTTTATTCATTAGTATTTTAAGTTTTACAAATATTTTTGCTTCGCAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGATTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAAAGCATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAGAAAATTGCA
GAAGAAATTCAAGCTTTACTTGATGAAAATACTACTAAGCCCATTATTAATACCAATGCGGGAATTATTACTTTAAATGC
TACCTTGTATGAGCTTGCAAGAGTTGAAAAATATCTAAAAGACTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGCCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCAATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTACTTTCTAACCCAAAACTCATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTGGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGCAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGTGCCTTGTTTCAAGGAAAGCAAAATTT
AGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	57.051	100	0.577