Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   WJ048_RS11250 Genome accession   NZ_CP149496
Coordinates   2240967..2242772 (-) Length   601 a.a.
NCBI ID   WP_011702959.1    Uniprot ID   A0AKU1
Organism   Listeria welshimeri strain DSM 20650 V8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2235967..2247772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ048_RS11230 (WJ048_11225) isdE 2236907..2237779 (-) 873 WP_011702955.1 heme ABC transporter substrate-binding protein IsdE -
  WJ048_RS11235 (WJ048_11230) - 2237866..2239590 (-) 1725 WP_011702956.1 NEAT domain-containing protein -
  WJ048_RS11240 (WJ048_11235) isdC 2239603..2240229 (-) 627 WP_011702957.1 heme uptake protein IsdC -
  WJ048_RS11245 (WJ048_11240) - 2240422..2240688 (-) 267 WP_011702958.1 DUF3116 family protein -
  WJ048_RS11250 (WJ048_11245) pepF 2240967..2242772 (-) 1806 WP_011702959.1 oligoendopeptidase F Regulator
  WJ048_RS11255 (WJ048_11250) - 2242845..2243960 (-) 1116 WP_011702960.1 competence protein CoiA -
  WJ048_RS11260 (WJ048_11255) mecA 2244086..2244739 (-) 654 WP_011702961.1 adaptor protein MecA -
  WJ048_RS11265 (WJ048_11260) spxA 2244961..2245356 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  WJ048_RS11270 (WJ048_11265) - 2245675..2246643 (-) 969 WP_011702962.1 ABC transporter ATP-binding protein -
  WJ048_RS11275 (WJ048_11270) - 2246640..2247716 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68638.83 Da        Isoelectric Point: 4.5491

>NTDB_id=959617 WJ048_RS11250 WP_011702959.1 2240967..2242772(-) (pepF) [Listeria welshimeri strain DSM 20650 V8]
MSKTNALPLREEVPEELTWDLTTIFPSDEAFEEAFLDLQKMTEESNQFKGRLAESSQILFEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLYSRAGSLATKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPSIKDENGEEIEITHGRYGKLLESNDPRVRRDAFFGVYSVYEGLKNTLASTLNG
QVKKSNFYAATRGYKSAREAALSGNHIPETVYDALLNSVNTNANLLHRYVKLRKELLGLDELHMYDLYTPLSDDVNLEFT
YDEAKELVLEALKPLGEEYQSILKEAFDSRWIDVIENKGKRSGAYSSGSYSTSPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQNGT
ALTADYLTETYFDINKKYYGEDMVYDTEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILLEGQEAVTAYIDFLKAG
SSDYPIEVLKKAGVDMTTPDPVNDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=959617 WJ048_RS11250 WP_011702959.1 2240967..2242772(-) (pepF) [Listeria welshimeri strain DSM 20650 V8]
TTGAGTAAAACTAATGCATTACCTTTAAGAGAAGAAGTACCAGAAGAATTAACATGGGATTTAACAACTATTTTTCCGAG
TGATGAGGCTTTTGAAGAAGCTTTTCTTGATTTACAAAAAATGACAGAAGAAAGTAATCAATTTAAAGGTCGTTTAGCTG
AAAGTAGTCAAATTCTTTTTGAGGCACTTCAATTTCGGGATAAAGCTTATGATCTAATTAGTAATTTATATGTTTATGCA
CATTTGAAAATGGACCAAGATACTGCTAATGCAAAATATCAAGGTTTATATAGTCGTGCAGGAAGTTTAGCAACAAAATT
AATGTCGGCATTATCTTATTATGATCCAGAAATTTTAGCTATGGACGAAAGTGTTTTAAAGCAATTTTTAAATGAAAATA
AAGACTTGCAATTATATGCACATTTATTGGAAGAATTGAATCTCAGTCGACCTTATATTTTAAGTGAGAAGGAAGAAGCT
TTATTAGCCAATGCTGGTGAAGTTCTTGGGAGTTCTTCTAACACGTTTAATACGTTAAACAATGCAGATATGAAATTTCC
TTCTATTAAAGATGAGAATGGTGAAGAGATTGAAATTACTCATGGTCGATATGGTAAATTATTAGAGAGTAATGACCCAC
GTGTTCGCCGGGATGCTTTTTTTGGAGTATATTCCGTTTATGAAGGATTAAAGAATACATTAGCTTCTACTTTAAATGGA
CAAGTGAAAAAATCGAACTTTTATGCAGCTACTAGAGGGTATAAATCTGCTCGTGAAGCAGCACTTTCAGGTAATCATAT
TCCTGAAACTGTATATGATGCCTTACTAAACTCAGTGAACACTAATGCTAATTTACTTCATCGCTATGTGAAATTACGTA
AAGAGCTGTTAGGTTTAGATGAGTTGCATATGTATGATTTGTATACGCCGCTTTCAGATGATGTTAACTTGGAATTCACA
TACGATGAAGCCAAAGAACTGGTTCTTGAAGCGTTGAAGCCACTTGGAGAAGAATACCAATCTATTTTAAAAGAAGCATT
TGATAGTCGTTGGATTGATGTAATAGAAAATAAAGGTAAACGTAGTGGCGCGTATTCGTCTGGTTCTTATAGTACAAGTC
CATATATTTTACTGAATTGGCAAGATAATATTAATAATGTTTACACTCTTGCTCATGAACTTGGACATAGTGTGCATAGT
TATTATACAAGAAAAAATCAGCCTTTCGTTTATGGTGATTATTCTATTTTCTTAGCAGAGGTTGCATCTACGACGAATGA
AAATCTATTGACAGATTACCTTTTGAAAAAGTATGATGATCCAAAAGTCCGTGCCTATTTATTAAATCATTATTTAGACG
GATTTAAAGGGACTGTATTCCGTCAAACGCAATTTGCTGAATTTGAGCATGCTATTCACCAAGCAGATCAAAATGGTACG
GCATTGACTGCTGATTATCTAACAGAGACTTATTTTGATATTAATAAGAAATATTACGGCGAAGATATGGTTTATGATAC
TGAAATTGGTTATGAATGGTCTCGGATTCCACATTTCTATATGAATTATTACGTGTTCCAATATGCGACTGGTTTTTCAG
CAGCTTCTGCATTAAGTGCAAAAATTCTACTTGAAGGACAAGAAGCGGTAACAGCTTATATTGATTTCTTGAAAGCTGGT
AGTTCGGATTATCCTATTGAAGTTCTGAAAAAAGCAGGAGTAGATATGACAACTCCAGACCCAGTAAATGACGCATTAAA
AGTTTTTGAGCAAAGATTAGACGAACTAGAAAAATTAGTTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AKU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.182

98.502

0.504