Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AABA19_RS05825 Genome accession   NZ_AP028609
Coordinates   1154657..1156324 (-) Length   555 a.a.
NCBI ID   WP_050104823.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1149657..1161324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS05795 - 1149987..1150789 (-) 803 Protein_1148 IS5 family transposase -
  AABA19_RS05800 (TKY121806_11430) - 1150809..1151099 (-) 291 WP_000590558.1 PTS sugar transporter subunit IIB -
  AABA19_RS05805 - 1151137..1151612 (-) 476 Protein_1150 PTS sugar transporter subunit IIA -
  AABA19_RS05810 (TKY121806_11450) - 1151792..1151944 (+) 153 WP_001809697.1 hypothetical protein -
  AABA19_RS05815 (TKY121806_11460) lepA 1152025..1153848 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  AABA19_RS05820 (TKY121806_11470) - 1153927..1154655 (-) 729 WP_050104822.1 metallophosphoesterase family protein -
  AABA19_RS05825 (TKY121806_11480) recN 1154657..1156324 (-) 1668 WP_050104823.1 DNA repair protein RecN Machinery gene
  AABA19_RS05830 (TKY121806_11490) - 1156331..1156762 (-) 432 WP_001034415.1 arginine repressor -
  AABA19_RS05835 (TKY121806_11500) - 1156755..1157570 (-) 816 WP_001041069.1 TlyA family RNA methyltransferase -
  AABA19_RS05840 (TKY121806_11510) - 1157563..1158438 (-) 876 WP_000743811.1 polyprenyl synthetase family protein -
  AABA19_RS05845 (TKY121806_11520) - 1158435..1158647 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  AABA19_RS05850 (TKY121806_11530) xseA 1158625..1159965 (-) 1341 WP_050104824.1 exodeoxyribonuclease VII large subunit -
  AABA19_RS05855 (TKY121806_11540) udk 1160093..1160731 (-) 639 WP_001181378.1 uridine kinase -
  AABA19_RS05860 (TKY121806_11550) - 1160839..1161141 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62822.25 Da        Isoelectric Point: 4.6517

>NTDB_id=95960 AABA19_RS05825 WP_050104823.1 1154657..1156324(-) (recN) [Streptococcus pneumoniae strain Sep4]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLETEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=95960 AABA19_RS05825 WP_050104823.1 1154657..1156324(-) (recN) [Streptococcus pneumoniae strain Sep4]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAACTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44