Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AABA19_RS02765 Genome accession   NZ_AP028609
Coordinates   540625..540891 (+) Length   88 a.a.
NCBI ID   WP_050206510.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535625..545891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS02745 (TKY121806_05390) - 535880..536389 (+) 510 WP_000619939.1 GNAT family N-acetyltransferase -
  AABA19_RS02750 (TKY121806_05400) pheT 536466..538871 (+) 2406 WP_033705499.1 phenylalanine--tRNA ligase subunit beta -
  AABA19_RS02755 (TKY121806_05410) - 538939..539940 (-) 1002 WP_050206509.1 endonuclease/exonuclease/phosphatase family protein -
  AABA19_RS02760 - 540096..540541 (+) 446 Protein_544 helix-turn-helix domain-containing protein -
  AABA19_RS02765 (TKY121806_05440) HI0659 540625..540891 (+) 267 WP_050206510.1 helix-turn-helix domain-containing protein Machinery gene
  AABA19_RS02770 (TKY121806_05450) metE 541152..543401 (+) 2250 WP_050084748.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AABA19_RS02775 (TKY121806_05460) metF 543465..544331 (+) 867 WP_000089979.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9606.16 Da        Isoelectric Point: 4.8274

>NTDB_id=95936 AABA19_RS02765 WP_050206510.1 540625..540891(+) (HI0659) [Streptococcus pneumoniae strain Sep4]
MEGCPSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEEFSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=95936 AABA19_RS02765 WP_050206510.1 540625..540891(+) (HI0659) [Streptococcus pneumoniae strain Sep4]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAATTCAGTGGAGTGAGTCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

62.338

87.5

0.545

Multiple sequence alignment