Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACI3MX_RS06275 Genome accession   NZ_CP173463
Coordinates   1060492..1061925 (-) Length   477 a.a.
NCBI ID   WP_000809051.1    Uniprot ID   A0A0H2VDV8
Organism   Escherichia coli strain 98228     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1055492..1066925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MX_RS06240 (ACI3MX_06240) elbB 1056184..1056837 (+) 654 WP_001300411.1 isoprenoid biosynthesis glyoxalase ElbB -
  ACI3MX_RS06245 (ACI3MX_06245) mtgA 1056834..1057562 (+) 729 WP_020233285.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  ACI3MX_RS06250 (ACI3MX_06250) yrbL 1057559..1058191 (-) 633 WP_000620396.1 PhoP regulatory network protein YrbL -
  ACI3MX_RS06255 (ACI3MX_06255) npr 1058404..1058676 (-) 273 WP_000216791.1 PTS phosphocarrier protein NPr -
  ACI3MX_RS06260 (ACI3MX_06260) rapZ 1058673..1059527 (-) 855 WP_000243741.1 RNase adapter RapZ -
  ACI3MX_RS06265 (ACI3MX_06265) ptsN 1059573..1060064 (-) 492 WP_000183676.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACI3MX_RS06270 (ACI3MX_06270) hpf 1060182..1060469 (-) 288 WP_001176599.1 ribosome hibernation promoting factor -
  ACI3MX_RS06275 (ACI3MX_06275) rpoN/rpoN1 1060492..1061925 (-) 1434 WP_000809051.1 RNA polymerase factor sigma-54 Machinery gene
  ACI3MX_RS06280 (ACI3MX_06280) lptB 1061973..1062698 (-) 726 WP_000224099.1 LPS export ABC transporter ATP-binding protein -
  ACI3MX_RS06285 (ACI3MX_06285) lptA 1062705..1063262 (-) 558 WP_000669785.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  ACI3MX_RS06290 (ACI3MX_06290) lptC 1063231..1063806 (-) 576 WP_000030537.1 LPS export ABC transporter periplasmic protein LptC -
  ACI3MX_RS06295 (ACI3MX_06295) kdsC 1063803..1064369 (-) 567 WP_000030006.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ACI3MX_RS06300 (ACI3MX_06300) kdsD 1064390..1065376 (-) 987 WP_001295557.1 arabinose-5-phosphate isomerase KdsD -
  ACI3MX_RS06305 (ACI3MX_06305) yrbG 1065390..1066367 (-) 978 WP_000922873.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53993.79 Da        Isoelectric Point: 4.3639

>NTDB_id=959293 ACI3MX_RS06275 WP_000809051.1 1060492..1061925(-) (rpoN/rpoN1) [Escherichia coli strain 98228]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPE
ELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIR
SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=959293 ACI3MX_RS06275 WP_000809051.1 1060492..1061925(-) (rpoN/rpoN1) [Escherichia coli strain 98228]
ATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCGATGACGCCACAGCTCCAACAGGCAATTCGTCTGTTGCA
GTTGTCGACGCTGGAACTTCAGCAGGAGCTACAGCAGGCGCTGGAGAGTAATCCGCTGCTTGAGCAAATCGACACTCATG
AAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAA
GAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGA
CGAGCTGCCGGTCTATCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTCGAGTTGACACCGTTTT
CTGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGACACCGGTTATCTGACTGTCCCACTGGAAGAT
ATTCTCGAAAGTATGGGCGATGAAGAGATTGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCC
GGTCGGTGTGGCAGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAAACCACGCCATGGCTGG
AAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGT
CTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCCGCGCCCCGGGCAGTCGATCCAGACGGG
CGAACCTGAGTATGTCATTCCAGATGTGCTGGTGCGTAAGCATAACGGTCACTGGACGGTAGAACTCAACAGTGACAGCA
TTCCGCGTCTGCAAATCAACCAGCACTACGCCTCGATGTGCAATAACGCGCGCAACGATGGTGACAGCCAGTTTATCCGC
AGCAATCTGCAGGATGCCAAATGGTTGATCAAGAGTCTGGAAAGCCGTAACGATACGCTACTGCGCGTGAGTCGCTGTAT
CGTTGAACAGCAGCAAGCCTTCTTTGAGCAAGGCGAAGAATATATGAAACCGATGGTACTGGCCGATATCGCCCAGGCTG
TCGAAATGCATGAATCGACGATATCTCGCGTGACCACGCAAAAATACCTGCATAGTCCACGAGGCATTTTTGAACTGAAG
TATTTCTTTTCCAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTGGTTAAGAAATT
AATCGCGGCGGAAAACCCAGCGAAACCGTTGAGCGACAGCAAGTTAACCTCTTTGCTGTCGGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAGCTCGTTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VDV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.223

100

0.465