Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   WJ437_RS03025 Genome accession   NZ_CP149446
Coordinates   619842..620534 (-) Length   230 a.a.
NCBI ID   WP_092570492.1    Uniprot ID   -
Organism   Ignavigranum ruoffiae strain Ir2023     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 614842..625534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ437_RS03005 (WJ437_03000) - 616689..617633 (+) 945 WP_259561195.1 nitronate monooxygenase -
  WJ437_RS03010 (WJ437_03005) rpmF 617851..618030 (-) 180 WP_092570498.1 50S ribosomal protein L32 -
  WJ437_RS03015 (WJ437_03010) - 618046..618465 (-) 420 WP_419775374.1 hypothetical protein -
  WJ437_RS03020 (WJ437_03015) - 618513..619838 (-) 1326 WP_092570494.1 sensor histidine kinase -
  WJ437_RS03025 (WJ437_03020) scnR 619842..620534 (-) 693 WP_092570492.1 response regulator transcription factor Regulator
  WJ437_RS03030 (WJ437_03025) - 620673..621593 (+) 921 WP_092570490.1 ABC transporter ATP-binding protein -
  WJ437_RS03035 (WJ437_03030) - 621590..622330 (+) 741 WP_092570487.1 hypothetical protein -
  WJ437_RS03040 (WJ437_03035) - 622332..623066 (+) 735 WP_092570485.1 ABC transporter permease -
  WJ437_RS03045 (WJ437_03040) - 623312..624118 (-) 807 WP_092570483.1 DUF6612 family protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26944.10 Da        Isoelectric Point: 8.2898

>NTDB_id=959180 WJ437_RS03025 WP_092570492.1 619842..620534(-) (scnR) [Ignavigranum ruoffiae strain Ir2023]
MNYYQRRLLLVEDHQEIAQFIRQSLIQAGFQSINWKADFQSALLALDQEAFDLAILDIMLPDGNGYDLLQYIRQSSRMPV
LFLSAVSDIEQQYKGFELGADDYIVKPFKTRDLVLRIRSLLKRAYPEARNWIQIGNRRVDFSRAIIIHQQEEIPLTAKEY
AILKVLADQPNRIVSFDQIMIQVWGHAYEGYQNSLMAHIHKIRQKIENNPTEPKYLLTMKGLGYKLNLER

Nucleotide


Download         Length: 693 bp        

>NTDB_id=959180 WJ437_RS03025 WP_092570492.1 619842..620534(-) (scnR) [Ignavigranum ruoffiae strain Ir2023]
GTGAACTATTATCAACGCCGTCTATTATTGGTCGAGGATCACCAAGAGATTGCTCAATTTATTCGTCAAAGTTTAATACA
AGCCGGTTTCCAATCGATTAATTGGAAAGCAGATTTCCAATCCGCCCTTCTAGCACTGGACCAAGAGGCTTTCGATTTAG
CCATACTAGATATCATGCTTCCTGATGGAAATGGCTATGACCTTCTACAATATATTCGTCAAAGTTCGCGTATGCCCGTC
CTCTTCTTATCGGCCGTATCAGATATTGAACAACAATATAAAGGCTTTGAATTAGGTGCTGACGATTATATTGTCAAACC
CTTTAAGACACGTGACTTGGTTCTGCGGATTCGTTCCTTGCTTAAACGAGCCTATCCAGAAGCCAGAAATTGGATTCAAA
TTGGCAACCGCAGAGTTGACTTTAGTCGGGCAATCATTATTCATCAACAAGAAGAAATTCCTTTAACCGCCAAAGAATAT
GCTATTCTTAAGGTATTAGCGGACCAACCTAACCGGATAGTAAGCTTTGACCAAATAATGATACAAGTCTGGGGGCATGC
CTATGAGGGCTATCAGAATAGCTTGATGGCTCATATCCATAAAATTCGCCAAAAAATCGAAAATAACCCCACTGAACCTA
AGTATCTATTGACAATGAAAGGCTTAGGCTACAAATTAAATTTGGAGCGATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-226)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

56.579

99.13

0.561