Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   WDR05_RS19315 Genome accession   NZ_CP149444
Coordinates   3718508..3719653 (+) Length   381 a.a.
NCBI ID   WP_113712952.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3713508..3724653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS19290 (WDR05_19270) albF 3713524..3714804 (+) 1281 WP_003242974.1 pitrilysin family protein -
  WDR05_RS19295 (WDR05_19275) albG 3714801..3715502 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  WDR05_RS19300 (WDR05_19280) ywhL 3715508..3716884 (-) 1377 WP_110109508.1 YncE family protein -
  WDR05_RS19305 (WDR05_19285) ywhK 3716923..3718278 (-) 1356 WP_406627073.1 YncE family protein -
  WDR05_RS19310 (WDR05_19290) - 3718275..3718505 (-) 231 WP_024572000.1 hypothetical protein -
  WDR05_RS19315 (WDR05_19295) rapF 3718508..3719653 (+) 1146 WP_113712952.1 response regulator aspartate phosphatase RapF Regulator
  WDR05_RS19320 (WDR05_19300) phrF 3719637..3719756 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  WDR05_RS19325 (WDR05_19305) - 3720013..3720492 (+) 480 WP_015714892.1 hypothetical protein -
  WDR05_RS19330 (WDR05_19310) - 3720641..3721429 (+) 789 WP_015714893.1 membrane protein -
  WDR05_RS19335 (WDR05_19315) - 3721416..3722090 (+) 675 WP_015714894.1 hypothetical protein -
  WDR05_RS19340 (WDR05_19320) - 3722100..3722897 (+) 798 WP_231573542.1 hypothetical protein -
  WDR05_RS19345 (WDR05_19325) - 3722900..3723547 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  WDR05_RS19350 (WDR05_19330) - 3723540..3724100 (+) 561 WP_029726083.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45680.14 Da        Isoelectric Point: 4.9912

>NTDB_id=959157 WDR05_RS19315 WP_113712952.1 3718508..3719653(+) (rapF) [Bacillus subtilis strain HC-9]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAEDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=959157 WDR05_RS19315 WP_113712952.1 3718508..3719653(+) (rapF) [Bacillus subtilis strain HC-9]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGAAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-208)

Tetratricopeptide repeat (TPR_12)

(223-290)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572