Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   WDR05_RS14295 Genome accession   NZ_CP149444
Coordinates   2727287..2728033 (-) Length   248 a.a.
NCBI ID   WP_072692713.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722287..2733033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS14270 (WDR05_14255) mreC 2722696..2723568 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  WDR05_RS14275 (WDR05_14260) mreB 2723599..2724612 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  WDR05_RS14280 (WDR05_14265) radC 2724704..2725399 (-) 696 WP_015251546.1 DNA repair protein RadC -
  WDR05_RS14285 (WDR05_14270) maf 2725436..2726005 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  WDR05_RS14290 (WDR05_14275) spoIIB 2726158..2727153 (-) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  WDR05_RS14295 (WDR05_14280) comC 2727287..2728033 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  WDR05_RS14300 (WDR05_14285) folC 2728175..2729467 (-) 1293 WP_038427817.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  WDR05_RS14305 (WDR05_14290) valS 2729527..2732169 (-) 2643 WP_029727115.1 valine--tRNA ligase -
  WDR05_RS14310 (WDR05_14295) - 2732617..2732808 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=959140 WDR05_RS14295 WP_072692713.1 2727287..2728033(-) (comC) [Bacillus subtilis strain HC-9]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPATELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=959140 WDR05_RS14295 WP_072692713.1 2727287..2728033(-) (comC) [Bacillus subtilis strain HC-9]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAACAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992