Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WDR05_RS11545 Genome accession   NZ_CP149444
Coordinates   2244919..2245539 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2239919..2250539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS11505 (WDR05_11495) ptsA 2241050..2241556 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WDR05_RS11510 (WDR05_11500) ypqA 2241694..2242113 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WDR05_RS11515 (WDR05_11505) sppG 2242134..2242511 (-) 378 WP_004398696.1 YppG family protein -
  WDR05_RS11520 (WDR05_11510) yppF 2242699..2242887 (+) 189 WP_140599951.1 YppF family protein -
  WDR05_RS11525 (WDR05_11515) yppE 2242926..2243297 (-) 372 WP_003246080.1 YppE family protein -
  WDR05_RS11530 (WDR05_11520) yppD 2243343..2243588 (-) 246 WP_004398488.1 YppD family protein -
  WDR05_RS11535 (WDR05_11525) sspM 2243787..2243891 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WDR05_RS11540 (WDR05_11530) yppC 2243916..2244878 (-) 963 WP_080529462.1 DUF2515 domain-containing protein -
  WDR05_RS11545 (WDR05_11535) recU 2244919..2245539 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WDR05_RS11550 (WDR05_11540) ponA 2245561..2248305 (+) 2745 WP_029726784.1 transglycosylase domain-containing protein -
  WDR05_RS11555 (WDR05_11545) ypoC 2248381..2248875 (-) 495 WP_029726783.1 YpoC family protein -
  WDR05_RS11560 (WDR05_11550) nth 2248872..2249531 (-) 660 WP_029726782.1 endonuclease III -
  WDR05_RS11565 (WDR05_11555) dnaD 2249550..2250248 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=959120 WDR05_RS11545 WP_004399067.1 2244919..2245539(+) (recU) [Bacillus subtilis strain HC-9]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=959120 WDR05_RS11545 WP_004399067.1 2244919..2245539(+) (recU) [Bacillus subtilis strain HC-9]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1