Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WDR05_RS08155 Genome accession   NZ_CP149444
Coordinates   1533198..1533476 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain HC-9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1528198..1538476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS08135 (WDR05_08130) panEB 1529386..1530297 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  WDR05_RS08140 (WDR05_08135) ampS 1530331..1531563 (-) 1233 WP_003232341.1 aminopeptidase -
  WDR05_RS08145 (WDR05_08140) ykpC 1531672..1531806 (-) 135 WP_003238865.1 protein YkpC -
  WDR05_RS08150 (WDR05_08145) mreBH 1531907..1532914 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WDR05_RS08155 (WDR05_08150) abrB 1533198..1533476 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WDR05_RS08160 (WDR05_08155) kinC 1533666..1534952 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  WDR05_RS08165 (WDR05_08160) ykqA 1534968..1535795 (+) 828 WP_046160350.1 gamma-glutamylcyclotransferase -
  WDR05_RS08170 (WDR05_08165) ktrC 1535858..1536523 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WDR05_RS08175 (WDR05_08170) ade 1536679..1538412 (+) 1734 WP_015715822.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=959115 WDR05_RS08155 WP_003244728.1 1533198..1533476(+) (abrB) [Bacillus subtilis strain HC-9]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=959115 WDR05_RS08155 WP_003244728.1 1533198..1533476(+) (abrB) [Bacillus subtilis strain HC-9]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576