Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   WDR05_RS08035 Genome accession   NZ_CP149444
Coordinates   1509118..1509693 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504118..1514693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS08005 (WDR05_08000) dapD 1504304..1505014 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  WDR05_RS08010 (WDR05_08005) dapI 1505084..1506208 (+) 1125 WP_021479383.1 N-acetyldiaminopimelate deacetylase -
  WDR05_RS08015 (WDR05_08010) ykuS 1506270..1506515 (+) 246 WP_003232382.1 YkuS family protein -
  WDR05_RS08020 (WDR05_08015) mscT 1506552..1507355 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  WDR05_RS08025 (WDR05_08020) ahpA 1507592..1508134 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  WDR05_RS08030 (WDR05_08025) ykuV 1508206..1508652 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  WDR05_RS08035 (WDR05_08030) rok 1509118..1509693 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  WDR05_RS08040 (WDR05_08035) cse15 1509734..1510699 (-) 966 WP_029727015.1 spore protein Cse15 -
  WDR05_RS08045 (WDR05_08040) mobA 1510836..1511435 (+) 600 WP_021479380.1 molybdenum cofactor guanylyltransferase -
  WDR05_RS08050 (WDR05_08045) moeB 1511486..1512505 (+) 1020 WP_017696813.1 molybdopterin-synthase adenylyltransferase MoeB -
  WDR05_RS08055 (WDR05_08050) glp 1512523..1513815 (+) 1293 WP_038427631.1 gephyrin-like molybdotransferase Glp -
  WDR05_RS08060 (WDR05_08055) mobB 1513776..1514297 (+) 522 WP_406627092.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=959114 WDR05_RS08035 WP_003232378.1 1509118..1509693(+) (rok) [Bacillus subtilis strain HC-9]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=959114 WDR05_RS08035 WP_003232378.1 1509118..1509693(+) (rok) [Bacillus subtilis strain HC-9]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1