Detailed information NTG0959112

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3NA_RS04720
• Genome accession: NZ_CP173445
• Coordinates: 772028..773020 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 98233
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 767028..778020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3NA_RS04700 (ACI3NA_04695)	otnK	767803..769065 (+)	1263	WP_285929947.1	3-oxo-tetronate kinase	-
ACI3NA_RS04705 (ACI3NA_04700)	ygbL	769062..769700 (+)	639	WP_001278994.1	aldolase	-
ACI3NA_RS04710 (ACI3NA_04705)	ygbM	769705..770481 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACI3NA_RS04715 (ACI3NA_04710)	ygbN	770570..771934 (+)	1365	WP_000104456.1	GntP family transporter	-
ACI3NA_RS04720 (ACI3NA_04715)	rpoS	772028..773020 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACI3NA_RS04725 (ACI3NA_04720)	nlpD	773083..774177 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACI3NA_RS04730 (ACI3NA_04725)	pcm	774362..774988 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI3NA_RS04735 (ACI3NA_04730)	surE	774982..775743 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACI3NA_RS04740 (ACI3NA_04735)	truD	775724..776773 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACI3NA_RS04745 (ACI3NA_04740)	ispF	776770..777249 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3NA_RS04750 (ACI3NA_04745)	ispD	777249..777959 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=959112 ACI3NA_RS04720 WP_000081550.1 772028..773020(-) (rpoS) [Escherichia coli strain 98233]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=959112 ACI3NA_RS04720 WP_000081550.1 772028..773020(-) (rpoS) [Escherichia coli strain 98233]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715