Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   WDR05_RS06230 Genome accession   NZ_CP149444
Coordinates   1206492..1207643 (+) Length   383 a.a.
NCBI ID   WP_069703690.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1201492..1212643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS06195 (WDR05_06190) yjbB 1202164..1203381 (+) 1218 WP_080477793.1 MFS transporter -
  WDR05_RS06200 (WDR05_06195) yjbC 1203545..1204123 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  WDR05_RS06205 (WDR05_06200) spx 1204304..1204699 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  WDR05_RS06210 (WDR05_06205) yjbE 1204742..1205398 (-) 657 WP_003232944.1 TerC family protein -
  WDR05_RS06215 (WDR05_06210) - 1205568..1205708 (+) 141 WP_119122854.1 hypothetical protein -
  WDR05_RS06220 (WDR05_06215) mecA 1205675..1206331 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  WDR05_RS06225 (WDR05_06220) - 1206326..1206448 (-) 123 WP_003232940.1 hypothetical protein -
  WDR05_RS06230 (WDR05_06225) coiA 1206492..1207643 (+) 1152 WP_069703690.1 competence protein CoiA Machinery gene
  WDR05_RS06235 (WDR05_06230) pepF 1207873..1209702 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  WDR05_RS06240 (WDR05_06235) - 1209740..1209907 (-) 168 WP_003244944.1 hypothetical protein -
  WDR05_RS06245 (WDR05_06240) spxH 1210221..1211120 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  WDR05_RS06250 (WDR05_06245) bhbI 1211117..1211515 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  WDR05_RS06255 (WDR05_06250) cwlQ 1211770..1212504 (-) 735 WP_041340378.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44740.89 Da        Isoelectric Point: 10.1093

>NTDB_id=959109 WDR05_RS06230 WP_069703690.1 1206492..1207643(+) (coiA) [Bacillus subtilis strain HC-9]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQKGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRSECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=959109 WDR05_RS06230 WP_069703690.1 1206492..1207643(+) (coiA) [Bacillus subtilis strain HC-9]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGTGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAA
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTATACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAACGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTCCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGAGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

99.196

97.389

0.966