Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   WDR05_RS06105 Genome accession   NZ_CP149444
Coordinates   1183233..1184186 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain HC-9     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1178233..1189186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS06080 (WDR05_06075) argF 1180065..1181024 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  WDR05_RS06085 (WDR05_06080) yjzC 1181110..1181289 (+) 180 WP_003245356.1 YjzC family protein -
  WDR05_RS06090 (WDR05_06085) yjzD 1181335..1181520 (-) 186 WP_003245236.1 YjzD family protein -
  WDR05_RS06095 (WDR05_06090) - 1181769..1182503 (+) 735 WP_003245223.1 hypothetical protein -
  WDR05_RS06100 (WDR05_06095) - 1182585..1183142 (+) 558 WP_003232974.1 hypothetical protein -
  WDR05_RS06105 (WDR05_06100) med 1183233..1184186 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  WDR05_RS06110 (WDR05_06105) comZ 1184201..1184392 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  WDR05_RS06115 (WDR05_06110) yjzB 1184422..1184661 (-) 240 WP_003232972.1 spore coat protein YjzB -
  WDR05_RS06120 (WDR05_06115) fabH 1184826..1185764 (+) 939 WP_406627086.1 beta-ketoacyl-ACP synthase III -
  WDR05_RS06125 (WDR05_06120) fabF 1185787..1187028 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  WDR05_RS06130 (WDR05_06125) yjaZ 1187104..1187889 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  WDR05_RS06135 (WDR05_06130) appD 1188081..1189067 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=959104 WDR05_RS06105 WP_003245494.1 1183233..1184186(+) (med) [Bacillus subtilis strain HC-9]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=959104 WDR05_RS06105 WP_003245494.1 1183233..1184186(+) (med) [Bacillus subtilis strain HC-9]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1