Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WDR05_RS05650 Genome accession   NZ_CP149444
Coordinates   1093717..1094295 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain HC-9     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088717..1099295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS05625 - 1089228..1089743 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  WDR05_RS05630 - 1089984..1090610 (-) 627 Protein_1042 protoglobin domain-containing protein -
  WDR05_RS05635 (WDR05_05630) comW 1090665..1092194 (-) 1530 WP_038829148.1 FAD-dependent oxidoreductase -
  WDR05_RS05640 (WDR05_05635) yhxC 1092306..1093163 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  WDR05_RS05645 (WDR05_05640) yhzC 1093191..1093424 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  WDR05_RS05650 (WDR05_05645) comK 1093717..1094295 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WDR05_RS05655 (WDR05_05650) yhxD 1094342..1095241 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  WDR05_RS05660 (WDR05_05655) yhjA 1095458..1095727 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  WDR05_RS05665 (WDR05_05660) yhjB 1095770..1097239 (-) 1470 WP_003233134.1 sodium:solute symporter -
  WDR05_RS05670 (WDR05_05665) yhjC 1097236..1097436 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WDR05_RS05675 (WDR05_05670) - 1097644..1098006 (-) 363 WP_003233132.1 hypothetical protein -
  WDR05_RS05680 (WDR05_05675) yhjE 1098158..1098781 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  WDR05_RS05685 (WDR05_05680) lepB 1098783..1099289 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=959101 WDR05_RS05650 WP_003245329.1 1093717..1094295(+) (comK) [Bacillus subtilis strain HC-9]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=959101 WDR05_RS05650 WP_003245329.1 1093717..1094295(+) (comK) [Bacillus subtilis strain HC-9]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1