Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   WDR05_RS04580 Genome accession   NZ_CP149444
Coordinates   902271..903065 (+) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 897271..908065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS04550 (WDR05_04550) sxzA 898110..899141 (+) 1032 WP_003233568.1 iron chelate uptake ABC transporter family permease subunit -
  WDR05_RS04555 (WDR05_04555) yfhB 899256..900137 (+) 882 WP_327827028.1 PhzF family phenazine biosynthesis isomerase -
  WDR05_RS04560 (WDR05_04560) yfhC 900225..900809 (+) 585 WP_003243940.1 nitroreductase -
  WDR05_RS04565 (WDR05_04565) yfhD 900848..901039 (-) 192 WP_003233561.1 YfhD family protein -
  WDR05_RS04570 (WDR05_04570) yfhE 901106..901216 (-) 111 WP_003223230.1 YfhE family protein -
  WDR05_RS04575 (WDR05_04575) yfhF 901271..902182 (-) 912 WP_029726845.1 TIGR01777 family oxidoreductase -
  WDR05_RS04580 (WDR05_04580) recX 902271..903065 (+) 795 WP_029726844.1 recombination regulator RecX Regulator
  WDR05_RS04585 (WDR05_04585) yfhH 903067..903387 (+) 321 WP_029726843.1 YfhH family protein -
  WDR05_RS04590 (WDR05_04590) yfhI 903524..904717 (+) 1194 WP_072692836.1 MFS transporter -
  WDR05_RS04595 (WDR05_04595) sspK 904749..904901 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  WDR05_RS04600 (WDR05_04600) yfhJ 905026..905295 (+) 270 WP_003243789.1 YfhJ family protein -
  WDR05_RS04605 (WDR05_04605) yfhK 905440..905958 (+) 519 WP_029726841.1 SH3 domain-containing protein -
  WDR05_RS04610 (WDR05_04610) spdL 906043..906360 (+) 318 WP_032679045.1 SdpC immunity protein SpdL -
  WDR05_RS04615 (WDR05_04615) ephM 906362..907222 (+) 861 WP_029726839.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=959096 WDR05_RS04580 WP_029726844.1 902271..903065(+) (recX) [Bacillus subtilis strain HC-9]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=959096 WDR05_RS04580 WP_029726844.1 902271..903065(+) (recX) [Bacillus subtilis strain HC-9]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAAATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996