Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   WDR05_RS01970 Genome accession   NZ_CP149444
Coordinates   369867..370265 (-) Length   132 a.a.
NCBI ID   WP_015715226.1    Uniprot ID   A0AA96URL7
Organism   Bacillus subtilis strain HC-9     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 364867..375265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS01940 (WDR05_01940) yckA 365445..366125 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  WDR05_RS01945 (WDR05_01945) yckB 366135..366998 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  WDR05_RS01950 (WDR05_01950) - 367160..367357 (+) 198 WP_119122841.1 hypothetical protein -
  WDR05_RS01955 (WDR05_01955) yckC 367376..367831 (+) 456 WP_029727075.1 RDD family protein -
  WDR05_RS01960 (WDR05_01960) yckD 367913..368245 (+) 333 WP_015252849.1 YckD family protein -
  WDR05_RS01965 (WDR05_01965) bglC 368397..369830 (+) 1434 WP_029727076.1 6-phospho-beta-glucosidase -
  WDR05_RS01970 (WDR05_01970) nin/comJ 369867..370265 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  WDR05_RS01975 (WDR05_01975) nucA/comI 370292..370741 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  WDR05_RS01980 (WDR05_01980) tlpC 370909..372630 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  WDR05_RS01985 (WDR05_01985) hxlB 372741..373298 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  WDR05_RS01990 (WDR05_01990) hxlA 373304..373936 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  WDR05_RS01995 (WDR05_01995) hxlR 374169..374531 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.90 Da        Isoelectric Point: 4.8991

>NTDB_id=959090 WDR05_RS01970 WP_015715226.1 369867..370265(-) (nin/comJ) [Bacillus subtilis strain HC-9]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=959090 WDR05_RS01970 WP_015715226.1 369867..370265(-) (nin/comJ) [Bacillus subtilis strain HC-9]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985