Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WEU38_RS05145 Genome accession   NZ_CP149437
Coordinates   1229120..1230652 (-) Length   510 a.a.
NCBI ID   WP_320001990.1    Uniprot ID   -
Organism   Cyanobacterium aponinum AL20118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1224120..1235652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WEU38_RS05135 (WEU38_05125) lpdA 1224698..1226122 (-) 1425 WP_190362045.1 dihydrolipoyl dehydrogenase -
  WEU38_RS05140 (WEU38_05130) - 1226351..1228597 (-) 2247 WP_206536248.1 MASE1 domain-containing protein -
  WEU38_RS05145 (WEU38_05135) radA 1229120..1230652 (-) 1533 WP_320001990.1 DNA repair protein RadA Machinery gene
  WEU38_RS05150 (WEU38_05140) - 1231032..1231433 (-) 402 WP_015219388.1 pre-16S rRNA-processing nuclease YqgF -
  WEU38_RS05155 (WEU38_05145) - 1231557..1232267 (+) 711 WP_099435933.1 TerC family protein -
  WEU38_RS05160 (WEU38_05150) - 1232408..1233463 (+) 1056 WP_015219386.1 AI-2E family transporter -
  WEU38_RS05165 (WEU38_05155) - 1233579..1235099 (+) 1521 WP_099435934.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55220.63 Da        Isoelectric Point: 5.1557

>NTDB_id=959070 WEU38_RS05145 WP_320001990.1 1229120..1230652(-) (radA) [Cyanobacterium aponinum AL20118]
MAKTRTVYICNCCGAESSQWFGKCPSCDTYGSLEEVILNSNGNFSRGGWQSNARPHQKNVTSPQPRISVKFSDIKEEEQP
RMNSGYQELDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQTANQLAIRFPRILYVSAEESGQQVKLRASRLGVGVIEEDEE
DLNHSHNGNGHKGNQTNQDYSEPNLYVLAETDLEEILRELESLKPQVAIIDSIQTLHFATLNSAPGSVSQVRECTSALMQ
VAKREGITLFIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEIGIFEMVDHGLDEVSNPSEL
FLSSRDELAPGTATIVSCEGTRCIVVELQALVSPTSYTSPRRSTTGVDYNRLQQILAVLEKRVGIPLSKLDAYVASAGGL
GVEEPAADLGMAIAIVASFRDRTVDPRTVLIGEIGLGGQVRLVSQMELRLKEAAKLGFKRAIVPKGQTYPSDLGLEILCV
GKVIDAIVLAIPNQSSSSVDINGDSIVEDP

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=959070 WEU38_RS05145 WP_320001990.1 1229120..1230652(-) (radA) [Cyanobacterium aponinum AL20118]
ATGGCAAAAACCAGAACTGTTTATATCTGTAACTGTTGCGGTGCAGAATCTTCTCAGTGGTTCGGAAAATGTCCCAGTTG
CGATACTTACGGTTCTTTGGAAGAAGTCATCCTTAATAGTAACGGAAACTTTAGCCGAGGTGGTTGGCAGTCAAATGCTC
GTCCTCACCAAAAAAACGTCACTTCCCCACAACCAAGAATTTCTGTTAAGTTTTCTGATATAAAAGAAGAAGAACAACCT
CGCATGAATTCTGGCTATCAGGAACTCGATCGAGTCTTAGGAGGAGGAATTGTTCCGGGTTCTTTGGTGTTAATTGGGGG
AGATCCCGGTATTGGCAAATCAACTCTATTGTTACAAACTGCTAATCAGTTAGCGATCCGTTTTCCTCGCATTCTTTACG
TTTCAGCCGAGGAATCGGGACAACAGGTCAAATTAAGAGCTTCTCGTCTAGGGGTAGGAGTGATAGAAGAAGATGAGGAG
GATCTTAATCACAGTCATAATGGTAATGGACACAAAGGGAATCAGACTAATCAAGACTATAGTGAACCGAATCTTTATGT
TTTAGCAGAAACAGATTTGGAAGAAATTTTAAGGGAATTGGAGTCTCTCAAGCCTCAAGTTGCGATTATTGACAGTATTC
AAACTCTTCATTTTGCCACTCTCAACTCTGCTCCCGGCTCTGTCTCTCAAGTAAGAGAATGTACTTCTGCCTTAATGCAG
GTTGCAAAGAGAGAGGGAATTACCTTATTTATCGTCGGTCATGTAACTAAAGAAGGTGCGATCGCAGGTCCTAGGGTGTT
AGAGCATTTAGTGGACACTGTACTATATTTTGAGGGCGATCGCTACGCTTCCCATCGTTTATTAAGATCTGTGAAAAATC
GTTTTGGGGCAACCCATGAAATCGGTATTTTTGAGATGGTGGATCATGGTTTAGACGAAGTTTCTAATCCTTCTGAGTTG
TTTTTAAGCAGTAGAGATGAATTAGCCCCCGGTACGGCTACAATCGTTTCCTGTGAGGGGACAAGATGTATAGTTGTTGA
GTTACAAGCCTTAGTAAGTCCCACCAGTTATACTTCTCCCCGTCGTTCTACCACAGGGGTTGACTATAATCGACTGCAAC
AGATTTTAGCGGTTTTAGAAAAACGAGTGGGAATTCCCCTCTCCAAATTAGATGCTTATGTAGCATCCGCAGGGGGATTA
GGAGTCGAAGAACCCGCCGCCGATTTAGGCATGGCTATTGCCATTGTGGCTAGTTTTCGCGATCGCACCGTTGACCCCCG
TACGGTTTTAATTGGTGAAATAGGTTTAGGGGGGCAAGTGCGCTTAGTCTCACAAATGGAATTAAGGCTTAAAGAAGCGG
CTAAACTGGGTTTCAAAAGAGCGATCGTTCCTAAAGGTCAAACTTACCCCAGCGATTTAGGTTTAGAGATTCTCTGTGTC
GGAAAGGTCATAGATGCGATCGTTTTAGCAATTCCTAATCAATCTTCTTCCTCTGTGGATATAAATGGAGATTCTATTGT
TGAAGATCCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(403-465)

KaiC (ATPase)

(84-294)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.797

96.471

0.48
  radA Streptococcus pneumoniae Rx1

45.53

94.314

0.429
  radA Streptococcus pneumoniae D39

45.53

94.314

0.429
  radA Streptococcus pneumoniae TIGR4

45.53

94.314

0.429
  radA Streptococcus pneumoniae R6

45.53

94.314

0.429
  radA Streptococcus mitis SK321

45.322

94.314

0.427
  radA Streptococcus mitis NCTC 12261

45.702

93.529

0.427