Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   WEU38_RS01790 Genome accession   NZ_CP149437
Coordinates   420411..421709 (+) Length   432 a.a.
NCBI ID   WP_015220030.1    Uniprot ID   A0AAF0ZGQ9
Organism   Cyanobacterium aponinum AL20118     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415411..426709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WEU38_RS01755 (WEU38_01740) dnaJ 415523..416653 (-) 1131 WP_155084098.1 molecular chaperone DnaJ -
  WEU38_RS01760 (WEU38_01745) sodX 416759..417109 (-) 351 WP_015220036.1 nickel-type superoxide dismutase maturation protease -
  WEU38_RS01765 (WEU38_01750) sodN 417142..417627 (-) 486 WP_015220035.1 superoxide dismutase, Ni -
  WEU38_RS01770 (WEU38_01755) - 417855..418490 (+) 636 WP_015220034.1 biopolymer transporter ExbD -
  WEU38_RS01775 (WEU38_01760) purS 418644..418907 (+) 264 WP_015220033.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  WEU38_RS01780 (WEU38_01765) purQ 418928..419608 (+) 681 WP_015220032.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  WEU38_RS01785 (WEU38_01770) - 419710..420390 (+) 681 WP_015220031.1 uracil-DNA glycosylase family protein -
  WEU38_RS01790 (WEU38_01775) comA 420411..421709 (+) 1299 WP_015220030.1 phospholipase D-like domain-containing protein Machinery gene
  WEU38_RS01795 (WEU38_01780) - 421892..423109 (+) 1218 WP_320001714.1 hypothetical protein -
  WEU38_RS01800 (WEU38_01785) - 423174..424010 (+) 837 WP_320001715.1 MBL fold metallo-hydrolase -
  WEU38_RS01805 (WEU38_01790) - 424012..424587 (-) 576 WP_015220027.1 DUF4340 domain-containing protein -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 48545.32 Da        Isoelectric Point: 7.3464

>NTDB_id=959066 WEU38_RS01790 WP_015220030.1 420411..421709(+) (comA) [Cyanobacterium aponinum AL20118]
MLKIISFPLGIIFGLIILGGCHNSPPKLPPLAQEESIQVYFNHNQAKGKEYEEPYRKIKRFGDDLETVLIEQINSANQTI
DIAIQELNLARLARAIVEKKKQGVKIRIVTENNYNKPLNQLPNNHGLAILKRANIPIIDDTEDGSKGSGLMHHKFVIIDQ
KKVVTGSANFTLSGIHGDFDNQETRGNTNHLIVFNSQEMAKIFTQEFNYLWGDGVGKKKDSLFGLNKPERRTKIVNIGSS
SIVVKFSPNSRSTLWENSSNGIIARELAKANSSIDLALFVFSDQEIANTLEKESLSGVKIRVLIDPNFAYQYYSEGLDLL
GVAIPRKCVYENDNNPWQQPLKTVGIPALPLGDKLHHKFAIIDRYIVITGSHNWSNSANHINDETLLVIYNPLIAQHFQR
EFDYLYHDAILGVSSELKKEIDQENSKCGLSN

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=959066 WEU38_RS01790 WP_015220030.1 420411..421709(+) (comA) [Cyanobacterium aponinum AL20118]
ATGCTTAAAATAATTAGTTTTCCCCTAGGGATAATTTTTGGCTTAATAATATTGGGTGGTTGTCATAATTCTCCACCTAA
ATTGCCACCTTTAGCTCAAGAGGAAAGCATTCAAGTTTATTTTAATCACAATCAAGCTAAAGGGAAAGAATACGAAGAAC
CCTATCGTAAAATTAAAAGATTTGGCGATGATTTAGAAACAGTTTTAATTGAGCAAATTAACAGTGCAAATCAAACTATT
GATATAGCAATTCAAGAATTAAATTTAGCACGATTAGCAAGGGCGATTGTAGAGAAAAAAAAGCAAGGTGTAAAAATAAG
AATTGTCACGGAAAATAATTATAATAAACCTTTAAATCAGTTGCCTAATAATCATGGTTTAGCAATTTTGAAAAGAGCTA
ATATACCTATCATTGACGATACGGAAGATGGGAGTAAGGGTAGCGGTTTAATGCACCATAAATTTGTTATTATTGATCAG
AAAAAAGTTGTAACCGGATCAGCAAATTTTACTCTTAGTGGTATTCATGGAGATTTTGATAATCAAGAAACAAGGGGAAA
TACAAATCATTTAATTGTATTTAATAGTCAAGAAATGGCTAAAATTTTTACTCAAGAATTTAACTACTTATGGGGTGATG
GAGTCGGAAAAAAGAAAGATAGCTTATTTGGTTTAAATAAACCAGAAAGACGCACAAAAATAGTAAATATCGGTAGTAGT
TCTATTGTGGTAAAATTTTCTCCTAATAGTCGATCAACTCTTTGGGAAAATAGTAGTAATGGTATTATTGCTAGGGAATT
GGCAAAGGCGAATAGCTCCATCGATTTAGCGTTATTTGTTTTCAGTGATCAAGAAATAGCAAATACCCTTGAAAAAGAAT
CATTATCGGGGGTTAAAATAAGGGTTTTAATCGATCCTAATTTTGCTTATCAATATTATAGTGAAGGGCTTGATTTATTA
GGTGTTGCAATACCAAGAAAATGTGTTTATGAGAATGATAATAATCCTTGGCAACAACCCCTAAAGACTGTTGGCATTCC
AGCTCTACCATTAGGAGATAAATTACACCATAAATTTGCTATAATCGACCGTTACATAGTTATTACAGGTTCTCATAATT
GGTCTAATTCTGCCAATCATATTAATGATGAAACTTTATTAGTTATTTATAATCCTCTAATCGCTCAACATTTTCAAAGA
GAATTTGATTATCTTTATCACGATGCAATATTAGGAGTTTCTTCGGAGTTAAAAAAGGAAATTGATCAAGAAAATTCAAA
ATGTGGGCTATCGAATTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(264-405)

PLD-like domain (PLDc_2)

(69-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

47.084

100

0.505