Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACI3M9_RS23625 Genome accession   NZ_CP173438
Coordinates   4750676..4751668 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain 98889     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4745676..4756668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M9_RS23615 (ACI3M9_23620) yieP 4748568..4749260 (+) 693 WP_029700766.1 FadR/GntR family transcriptional regulator -
  ACI3M9_RS23620 (ACI3M9_23625) mdtD 4749283..4750710 (+) 1428 WP_001280868.1 multidrug transporter subunit MdtD -
  ACI3M9_RS23625 (ACI3M9_23630) cytR 4750676..4751668 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACI3M9_RS23630 (ACI3M9_23635) rbsK 4751672..4752601 (-) 930 WP_001361791.1 ribokinase -
  ACI3M9_RS23635 (ACI3M9_23640) rbsB 4752727..4753617 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACI3M9_RS23640 (ACI3M9_23645) rbsC 4753642..4754607 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACI3M9_RS23645 (ACI3M9_23650) rbsA 4754612..4756117 (-) 1506 WP_000387762.1 ribose ABC transporter ATP-binding protein RbsA -
  ACI3M9_RS23650 (ACI3M9_23655) rbsD 4756125..4756544 (-) 420 WP_001296586.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=959004 ACI3M9_RS23625 WP_000224470.1 4750676..4751668(-) (cytR) [Escherichia coli strain 98889]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=959004 ACI3M9_RS23625 WP_000224470.1 4750676..4751668(-) (cytR) [Escherichia coli strain 98889]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCTGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364