Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   VZN89_RS03475 Genome accession   NZ_CP149430
Coordinates   804229..806169 (+) Length   646 a.a.
NCBI ID   WP_406606493.1    Uniprot ID   -
Organism   Bifidobacterium bifidum strain lw02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 799229..811169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZN89_RS03455 (VZN89_03430) - 799667..800665 (+) 999 WP_406606441.1 aldo/keto reductase -
  VZN89_RS03460 (VZN89_03435) - 801058..801366 (-) 309 WP_406606492.1 DUF1778 domain-containing protein -
  VZN89_RS03465 (VZN89_03440) - 801550..802080 (+) 531 WP_406606442.1 MarR family winged helix-turn-helix transcriptional regulator -
  VZN89_RS03470 (VZN89_03445) rcrP 802295..804178 (+) 1884 WP_013362999.1 ABC transporter ATP-binding protein Regulator
  VZN89_RS03475 rcrQ 804229..806169 (+) 1941 WP_406606493.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 70458.20 Da        Isoelectric Point: 6.4350

>NTDB_id=958953 VZN89_RS03475 WP_406606493.1 804229..806169(+) (rcrQ) [Bifidobacterium bifidum strain lw02]
MGGGRTVEKPANFGNVMGKLVHYCRNYLPVIIIALVLGAVGTICQIIGPDKLKDMTNEIVKGLPAVVNGKPVMNSVDFNA
VGRIAWLLVALYVGYAVLSYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSL
GSLITSATLFVGALVMMFYNNVIMTLCAIGASILGLIIMMVIMKSSQKYFARQQMALGDVNGHIEEMYAGHLIVKAYNGE
ADSIRRFEKYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVIVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQPLSQFAQ
AFQNLQRCAAAAERVFGFLEEPEMDAEPTKAELGVADAAASTARTDSGKLAHRGTRANATAGMTASQRSQLLGYDAAGNP
RTVRGDVEFSHVRFGYEPDKPIIHDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTTSVPRWNVH
DQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQIVSACKAVGLDHFVRSLPQGYDTVLDDNTSLSQGQRQLLTIARAMVQD
APILILDEATSSVDTRTEELIQKAMDALTVGRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNS
QFTLTD

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=958953 VZN89_RS03475 WP_406606493.1 804229..806169(+) (rcrQ) [Bifidobacterium bifidum strain lw02]
ATGGGCGGCGGCCGCACGGTCGAAAAGCCTGCCAATTTCGGCAACGTGATGGGCAAGCTCGTCCACTACTGCCGCAACTA
CCTGCCCGTCATCATCATTGCGCTCGTGCTGGGCGCGGTCGGCACGATATGCCAGATCATCGGACCGGACAAACTCAAGG
ACATGACCAACGAGATCGTCAAGGGACTGCCGGCCGTCGTGAACGGCAAGCCGGTGATGAACTCGGTCGATTTCAACGCC
GTCGGCCGCATCGCCTGGCTGCTCGTCGCACTGTACGTCGGCTACGCGGTGCTCAGCTACGTGCAAAGCTGGATGATGGC
GAACGTCACCCAGCGCACCGCCCAGCGCCTGCGCGAATCGATCTCGGTCAAAATCAACAAGCTGCCGCTCAAATACTTCG
ACAAGGTCAGCTACGGCGACGTACTCTCCCGCATCACCAACGACGTCGACGCCATCGGCCAGACGCTCGGCCAGTCCCTC
GGCTCGCTCATCACCTCGGCGACGCTGTTCGTTGGCGCGCTCGTCATGATGTTCTACAACAACGTCATCATGACCCTGTG
CGCGATCGGCGCGAGCATACTGGGACTCATCATCATGATGGTCATCATGAAATCCTCGCAGAAATACTTCGCCCGCCAGC
AGATGGCGCTCGGCGACGTCAACGGCCACATCGAGGAGATGTACGCCGGCCACCTCATCGTCAAGGCGTACAACGGCGAG
GCCGACTCAATCCGCCGCTTCGAGAAGTATAACGCCGACCTGTACGAATCCGGCTGGAAATCGCAGTTCCTGTCAGGCCT
GATGATGCCGCTGATGAACTTCGTCGGCAACTTCGGCTACGTGATCGTGTGCGTGGTCGGTGCGGCGCTCGCCATGGACG
GGAAGATCGAATTCGGCGTGATCGTCGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGTTGAGCCAGTTCGCGCAG
GCGTTCCAGAACCTGCAGCGATGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTCGAAGAGCCGGAGATGGATGCGGA
ACCGACCAAGGCCGAACTCGGCGTGGCTGATGCCGCTGCGAGCACGGCACGGACGGACAGCGGCAAGCTGGCGCATCGCG
GCACTCGCGCGAATGCCACCGCCGGTATGACGGCTTCGCAGCGTTCGCAGCTGCTCGGCTACGATGCGGCCGGCAACCCC
CGGACCGTGCGCGGCGACGTCGAATTCAGTCACGTGCGATTCGGCTATGAGCCCGACAAGCCGATCATCCACGACTTCTC
GGCAAGCGTCTCCGCCGGCCAGAAAGTCGCCATCGTCGGTCCGACCGGCGCCGGCAAAACCACCATGGTCAACCTGCTGA
TGCGCTTCTACGAGATCTCCGGCGGCTCCATCTCCATCGACGGCATCGACACCACTTCCGTGCCGCGCTGGAACGTACAC
GACCAGTTCTCCATGGTCCTGCAGGATACATGGGTGTTCCGTGGCACCGTGCGCGAAAACATCGCCTACTCCAAGCCCGG
CGTCACCGACGAGCAGATCGTCTCCGCATGCAAGGCCGTCGGACTCGACCACTTCGTGCGCTCTCTGCCGCAGGGCTACG
ACACCGTGCTCGACGACAACACCTCGCTCTCCCAAGGACAGCGCCAGCTGCTCACCATCGCCCGCGCCATGGTGCAGGAC
GCTCCGATCCTCATCCTTGACGAAGCCACCTCCTCCGTCGACACCCGCACCGAAGAACTCATCCAAAAGGCCATGGATGC
GTTGACCGTGGGGCGCACGAGCTTCGTCATCGCGCACCGCCTCTCCACCATCCGCGACGCCGACATGATTCTCGTCATGA
ACCACGGCGACGTGATCGAGCGCGGTACCCACGAGGAACTGCTCGCGGCGGGAGGGTTTTACGCCGACCTCTACAACAGC
CAATTCACACTCACCGATTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(32-315)

ABC transporter (ABC_tran)

(424-571)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.556

97.368

0.492