Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   VZN89_RS03470 Genome accession   NZ_CP149430
Coordinates   802295..804178 (+) Length   627 a.a.
NCBI ID   WP_013362999.1    Uniprot ID   -
Organism   Bifidobacterium bifidum strain lw02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 797295..809178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZN89_RS03435 (VZN89_03410) - 797321..797707 (-) 387 WP_406606440.1 hypothetical protein -
  VZN89_RS03445 (VZN89_03420) - 798514..798714 (-) 201 Protein_660 glycerophosphodiester phosphodiesterase -
  VZN89_RS03450 (VZN89_03425) - 798673..799431 (+) 759 WP_117745470.1 immunoglobulin-like domain-containing protein -
  VZN89_RS03455 (VZN89_03430) - 799667..800665 (+) 999 WP_406606441.1 aldo/keto reductase -
  VZN89_RS03460 (VZN89_03435) - 801058..801366 (-) 309 WP_406606492.1 DUF1778 domain-containing protein -
  VZN89_RS03465 (VZN89_03440) - 801550..802080 (+) 531 WP_406606442.1 MarR family winged helix-turn-helix transcriptional regulator -
  VZN89_RS03470 (VZN89_03445) rcrP 802295..804178 (+) 1884 WP_013362999.1 ABC transporter ATP-binding protein Regulator
  VZN89_RS03475 rcrQ 804229..806169 (+) 1941 WP_406606493.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68062.77 Da        Isoelectric Point: 6.0532

>NTDB_id=958952 VZN89_RS03470 WP_013362999.1 802295..804178(+) (rcrP) [Bifidobacterium bifidum strain lw02]
MLRILKYLSKAEIGQMLIALVTIVGQVFFDLKLPDYMSDITTLVETPGSAMSDIWIAGGKMLLISLGSVACAIVTGYISA
RVGSSFTQRLRSLEFRKVESYGPAEMSKFSTASLITRSTNDITQIQMFITIGLQLIVKSPIMAVWAICKIAGEGFEWTLA
TGIAVVILLVAVVIMMAMVMPKFKAMQKLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLTDKLNVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVLDTD
PIVKTGTKTAADVARLGGGKTGTVEFRNVSFTYPGSREATLEGIDFTAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAG
QVLVDGVDVREYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDDVNGASSADVEMADTSTPAGRKREAELIAAGKRAEGA
AMPAEQMNRVKAAAGVAQATEFVERMDGTYTAPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVR
DALAKEAKGSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHQELLDTCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=958952 VZN89_RS03470 WP_013362999.1 802295..804178(+) (rcrP) [Bifidobacterium bifidum strain lw02]
ATGCTTCGCATCCTGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTTCTTCGACCTCAAACTGCCCGATTACATGTCAGACATCACCACGCTCGTCGAGACGCCGGGCAGCGCGATGAGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCATCTCCCTCGGCTCCGTCGCCTGTGCCATCGTCACCGGCTACATCTCCGCA
CGCGTCGGCTCGTCATTCACCCAGCGCCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTATGGCCCCGCCGAAATGAG
CAAATTCTCCACCGCGAGCCTCATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATCGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCATATGCAAGATCGCCGGCGAAGGTTTCGAATGGACTCTCGCC
ACCGGCATCGCCGTCGTCATCCTGCTCGTCGCCGTCGTCATCATGATGGCCATGGTCATGCCCAAGTTCAAGGCCATGCA
GAAGCTCACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTCGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGGCCAAGTTCACCAAGGCCAACAAGGACCTCACTGACACGCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCCTATCTGATCGACGCCGC
CGGCCTGACGGACAAGCTCAACGTGTTCTCCAACATGGTCGTCTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTGCTCGACACCGAT
CCGATCGTCAAAACCGGCACCAAGACCGCCGCCGACGTGGCGCGTCTGGGCGGCGGGAAAACCGGCACCGTCGAGTTCCG
CAACGTGAGCTTCACCTACCCCGGCTCACGCGAGGCGACGCTCGAAGGCATCGACTTCACCGCCGAAAAGGGCCAGACCG
TCGCGTTCATCGGCTCCACCGGCTCCGGCAAGTCCAGCCTCATCAACCTCGTGCCGCGCTTCTACGACGTGTCGGCCGGG
CAGGTGCTCGTCGACGGTGTGGACGTGCGCGAATACGATCTGAAAGCCCTTCGCGACAAGATCGGATACGTGCCGCAGCA
GTCCGTGCTGTTCAAGGGCACGGTCGCATCCAACGTGAGCTACGGCGACGACGTGAACGGGGCAAGCTCCGCGGACGTCG
AAATGGCCGACACCTCCACTCCGGCCGGCCGCAAACGCGAAGCCGAACTCATCGCCGCGGGCAAGAGAGCGGAAGGCGCC
GCAATGCCGGCTGAACAGATGAACCGGGTCAAGGCGGCGGCCGGCGTCGCTCAGGCCACCGAGTTCGTCGAGCGTATGGA
CGGCACATACACCGCCCCGATCGCACAAGGCGGGTCCAACGTCTCCGGCGGCCAGAAGCAGCGCCTGTCAATCGCGCGCG
CCGTCTACCGCCACCCCGAAATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTTCGC
GACGCACTCGCCAAAGAAGCCAAGGGATCCACCAAGCTCATCGTCGCCCAGCGCATCGGCACGATCATGAACGCCGACCG
CATCATCGTGCTCGATGACGGCAAGGTCGTGGGCCAAGGCACCCATCAGGAACTGCTCGACACCTGCGATGTCTACCGTC
AGATCGCCGAATCCCAGCTCAGTCAGTCGGAACTGACCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-292)

ABC transporter (ABC_tran)

(361-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.567

100

0.483