Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACI2O8_RS19390 Genome accession   NZ_CP173415
Coordinates   3721277..3722410 (-) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain FJYA24     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3716277..3727410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS19350 (ACI2O8_19350) ywnA 3716409..3716810 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  ACI2O8_RS19355 (ACI2O8_19355) ureC 3716945..3718654 (-) 1710 WP_069322961.1 urease subunit alpha -
  ACI2O8_RS19360 (ACI2O8_19360) ureB 3718651..3719025 (-) 375 WP_003227726.1 urease subunit beta -
  ACI2O8_RS19365 (ACI2O8_19365) ureA 3719022..3719339 (-) 318 WP_003227724.1 urease subunit gamma -
  ACI2O8_RS19370 (ACI2O8_19370) - 3719534..3719694 (-) 161 Protein_3756 hypothetical protein -
  ACI2O8_RS19375 (ACI2O8_19375) - 3719903..3720085 (-) 183 WP_032727042.1 transporter substrate-binding protein -
  ACI2O8_RS19380 (ACI2O8_19380) csbD 3720383..3720571 (-) 189 WP_128422439.1 stress response protein CsbD -
  ACI2O8_RS19385 (ACI2O8_19385) - 3720644..3721123 (-) 480 WP_003244390.1 hypothetical protein -
  ACI2O8_RS19390 (ACI2O8_19390) rapC 3721277..3722410 (-) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  ACI2O8_RS19395 (ACI2O8_19395) moaA 3722603..3723628 (-) 1026 WP_160221874.1 GTP 3',8-cyclase MoaA -
  ACI2O8_RS19400 (ACI2O8_19400) fdhD 3723644..3724432 (-) 789 WP_015714864.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACI2O8_RS19405 (ACI2O8_19405) - 3724665..3724826 (-) 162 WP_003227706.1 hypothetical protein -
  ACI2O8_RS19410 (ACI2O8_19410) ywmD 3724921..3725595 (-) 675 WP_085185544.1 VWA domain-containing protein -
  ACI2O8_RS19415 (ACI2O8_19415) - 3725648..3725788 (-) 141 WP_014478246.1 hypothetical protein -
  ACI2O8_RS19420 (ACI2O8_19420) ywmC 3725919..3726602 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=958845 ACI2O8_RS19390 WP_014478242.1 3721277..3722410(-) (rapC) [Bacillus subtilis strain FJYA24]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=958845 ACI2O8_RS19390 WP_014478242.1 3721277..3722410(-) (rapC) [Bacillus subtilis strain FJYA24]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424