Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ACI2O8_RS11945 Genome accession   NZ_CP173415
Coordinates   2320321..2321811 (-) Length   496 a.a.
NCBI ID   WP_069703891.1    Uniprot ID   -
Organism   Bacillus subtilis strain FJYA24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2315321..2326811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS11915 (ACI2O8_11915) gudB 2315468..2316742 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  ACI2O8_RS11920 (ACI2O8_11920) mecB 2316898..2317482 (-) 585 WP_015714183.1 genetic competence negative regulator -
  ACI2O8_RS11925 (ACI2O8_11925) ypbG 2317641..2318420 (-) 780 WP_015251802.1 metallophosphoesterase -
  ACI2O8_RS11930 (ACI2O8_11930) ypbF 2318507..2318950 (-) 444 WP_003230531.1 YpbF family protein -
  ACI2O8_RS11935 (ACI2O8_11935) claE 2319013..2319741 (-) 729 WP_015714184.1 LysM peptidoglycan-binding domain-containing protein -
  ACI2O8_RS11940 (ACI2O8_11940) ypbD 2319692..2320294 (-) 603 WP_038429217.1 CPBP family intramembrane glutamic endopeptidase -
  ACI2O8_RS11945 (ACI2O8_11945) recS 2320321..2321811 (-) 1491 WP_069703891.1 ATP-dependent DNA helicase RecQ Machinery gene
  ACI2O8_RS11950 (ACI2O8_11950) gmmB 2321804..2322862 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  ACI2O8_RS11955 (ACI2O8_11955) fdxA 2323128..2323376 (+) 249 WP_003225461.1 ferredoxin -
  ACI2O8_RS11960 (ACI2O8_11960) fmnP 2323415..2323987 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  ACI2O8_RS11965 (ACI2O8_11965) serA 2324484..2326061 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56580.13 Da        Isoelectric Point: 6.4518

>NTDB_id=958790 ACI2O8_RS11945 WP_069703891.1 2320321..2321811(-) (recS) [Bacillus subtilis strain FJYA24]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHQYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPRDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=958790 ACI2O8_RS11945 WP_069703891.1 2320321..2321811(-) (recS) [Bacillus subtilis strain FJYA24]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAGGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCAATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTTCCGATTAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACTCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCATCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGTGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAAGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994