Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACI2O8_RS09485 Genome accession   NZ_CP173415
Coordinates   1801256..1801687 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain FJYA24     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796256..1806687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS09465 (ACI2O8_09465) spoVS 1796817..1797077 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ACI2O8_RS09470 (ACI2O8_09470) tdh 1797343..1798386 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  ACI2O8_RS09475 (ACI2O8_09475) kbl 1798399..1799577 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  ACI2O8_RS09480 (ACI2O8_09480) miaB 1799725..1801254 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACI2O8_RS09485 (ACI2O8_09485) ymcA 1801256..1801687 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ACI2O8_RS09490 (ACI2O8_09490) cotE 1801949..1802494 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  ACI2O8_RS09495 (ACI2O8_09495) hexA 1802627..1805203 (+) 2577 WP_404978030.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=958781 ACI2O8_RS09485 WP_003231834.1 1801256..1801687(+) (ymcA) [Bacillus subtilis strain FJYA24]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=958781 ACI2O8_RS09485 WP_003231834.1 1801256..1801687(+) (ymcA) [Bacillus subtilis strain FJYA24]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1