Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACI2O8_RS07110 Genome accession   NZ_CP173415
Coordinates   1344587..1345723 (+) Length   378 a.a.
NCBI ID   WP_128422183.1    Uniprot ID   -
Organism   Bacillus subtilis strain FJYA24     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1339587..1350723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS07090 (ACI2O8_07090) uxaA 1340038..1341531 (+) 1494 WP_029317659.1 UxaA family hydrolase -
  ACI2O8_RS07095 (ACI2O8_07095) yjnA 1341570..1342334 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  ACI2O8_RS07100 (ACI2O8_07100) bstD 1342558..1343022 (-) 465 WP_014479541.1 DinB family protein -
  ACI2O8_RS07105 (ACI2O8_07105) yjoB 1343171..1344442 (+) 1272 WP_120363333.1 ATPase YjoB -
  ACI2O8_RS07110 (ACI2O8_07110) rapC 1344587..1345723 (+) 1137 WP_128422183.1 response regulator aspartate phosphatase RapA Regulator
  ACI2O8_RS07115 (ACI2O8_07115) phrA 1345713..1345847 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ACI2O8_RS07120 (ACI2O8_07120) yjpA 1345878..1346135 (-) 258 WP_003232731.1 YciI family protein -
  ACI2O8_RS07125 (ACI2O8_07125) xlyB 1346255..1347208 (+) 954 WP_128422184.1 N-acetylmuramoyl-L-alanine amidase -
  ACI2O8_RS07130 (ACI2O8_07130) yjqA 1347248..1347625 (-) 378 WP_014479546.1 PH domain-containing protein -
  ACI2O8_RS07135 (ACI2O8_07135) pghB 1347731..1348333 (+) 603 WP_003232725.1 poly-gamma-glutamate hydrolase family protein -
  ACI2O8_RS07140 (ACI2O8_07140) xpdC 1348410..1349246 (+) 837 WP_003245071.1 manganese catalase family protein -
  ACI2O8_RS07145 (ACI2O8_07145) xkdA 1349303..1349899 (-) 597 WP_015715727.1 ImmA/IrrE family metallo-endopeptidase -
  ACI2O8_RS07150 (ACI2O8_07150) xre 1350062..1350403 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45047.21 Da        Isoelectric Point: 4.6857

>NTDB_id=958760 ACI2O8_RS07110 WP_128422183.1 1344587..1345723(+) (rapC) [Bacillus subtilis strain FJYA24]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTEVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=958760 ACI2O8_RS07110 WP_128422183.1 1344587..1345723(+) (rapC) [Bacillus subtilis strain FJYA24]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGTTGGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCTTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACAGAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415