Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACI2O8_RS06020 Genome accession   NZ_CP173415
Coordinates   1143913..1144491 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   P40396
Organism   Bacillus subtilis strain FJYA24     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1138913..1149491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS05995 (ACI2O8_05995) - 1139424..1139939 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  ACI2O8_RS06000 (ACI2O8_06000) - 1140180..1140806 (-) 627 Protein_1116 protoglobin domain-containing protein -
  ACI2O8_RS06005 (ACI2O8_06005) comW 1140861..1142390 (-) 1530 WP_404978019.1 FAD-dependent oxidoreductase -
  ACI2O8_RS06010 (ACI2O8_06010) yhxC 1142502..1143359 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ACI2O8_RS06015 (ACI2O8_06015) yhzC 1143387..1143620 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACI2O8_RS06020 (ACI2O8_06020) comK 1143913..1144491 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ACI2O8_RS06025 (ACI2O8_06025) yhxD 1144538..1145437 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  ACI2O8_RS06030 (ACI2O8_06030) yhjA 1145654..1145923 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  ACI2O8_RS06035 (ACI2O8_06035) yhjB 1145966..1147435 (-) 1470 WP_003233134.1 sodium:solute symporter -
  ACI2O8_RS06040 (ACI2O8_06040) yhjC 1147432..1147632 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACI2O8_RS06045 (ACI2O8_06045) - 1147840..1148202 (-) 363 WP_003233132.1 hypothetical protein -
  ACI2O8_RS06050 (ACI2O8_06050) yhjE 1148354..1148977 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ACI2O8_RS06055 (ACI2O8_06055) lepB 1148979..1149485 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=958745 ACI2O8_RS06020 WP_003245329.1 1143913..1144491(+) (comK) [Bacillus subtilis strain FJYA24]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=958745 ACI2O8_RS06020 WP_003245329.1 1143913..1144491(+) (comK) [Bacillus subtilis strain FJYA24]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P40396

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1