Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AABA07_RS08415 Genome accession   NZ_AP028608
Coordinates   1665383..1666093 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain Sep3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660383..1671093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA07_RS08400 (TKY120829_16700) - 1660924..1661172 (-) 249 WP_000364990.1 YneF family protein -
  AABA07_RS08405 (TKY120829_16710) treC 1661428..1663053 (-) 1626 WP_000171221.1 alpha,alpha-phosphotrehalase -
  AABA07_RS08410 (TKY120829_16720) treP 1663231..1665198 (-) 1968 WP_000514301.1 PTS system trehalose-specific EIIBC component -
  AABA07_RS08415 (TKY120829_16730) treR 1665383..1666093 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  AABA07_RS08420 - 1666248..1667574 (+) 1327 Protein_1666 ISL3 family transposase -
  AABA07_RS08425 (TKY120829_16770) - 1667649..1668575 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein -
  AABA07_RS08430 (TKY120829_16780) amiE 1668586..1669653 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  AABA07_RS08435 (TKY120829_16790) amiD 1669662..1670588 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=95864 AABA07_RS08415 WP_000760673.1 1665383..1666093(+) (treR) [Streptococcus pneumoniae strain Sep3]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=95864 AABA07_RS08415 WP_000760673.1 1665383..1666093(+) (treR) [Streptococcus pneumoniae strain Sep3]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment