Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACI3L8_RS00365 Genome accession   NZ_CP173391
Coordinates   86115..87059 (+) Length   314 a.a.
NCBI ID   WP_404971735.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 81115..92059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS00350 (ACI3L8_00350) - 81677..82555 (+) 879 WP_404971733.1 AEC family transporter -
  ACI3L8_RS00355 (ACI3L8_00355) - 82647..83390 (+) 744 WP_404972088.1 metallophosphoesterase family protein -
  ACI3L8_RS00360 (ACI3L8_00360) - 83569..85704 (-) 2136 WP_404971734.1 condensation domain-containing protein -
  ACI3L8_RS00365 (ACI3L8_00365) ceuB 86115..87059 (+) 945 WP_404971735.1 ABC transporter permease Machinery gene
  ACI3L8_RS00370 (ACI3L8_00370) - 87056..88009 (+) 954 WP_191117512.1 iron chelate uptake ABC transporter family permease subunit -
  ACI3L8_RS00375 (ACI3L8_00375) - 88065..89048 (+) 984 WP_012127837.1 siderophore ABC transporter substrate-binding protein -
  ACI3L8_RS00380 (ACI3L8_00380) - 89187..91376 (+) 2190 WP_404971736.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33716.55 Da        Isoelectric Point: 8.4615

>NTDB_id=958627 ACI3L8_RS00365 WP_404971735.1 86115..87059(+) (ceuB) [Vibrio campbellii strain LB3]
MNAKIIFIFFLLCIVSIFIGANPIDWSLLLKMDESAWLPITASRLPRLVALILTGAGLAMCGVILQHIVRNRFVEPGTTG
GLDAAKLGILVSIVMLPNSDKLERMIFAVVFCFAAGLIYIAIVRKIKFSNSALVPVIGLMFGSVLSAIAEFYAYQNNVLQ
SMSGWLMGDFSKVVQEHYEIIYLILPTTLLTYFYANKFTVMGMGEDAASNLGINFATTAALGLMLVSVTVAVTVVTVGAI
HFVGLVIPNLVALKYGDHLKNTLPIVALGGASLLIFCDVISRLVVFPFEVPIGLTASAIGGPLFLVLLLKGARA

Nucleotide


Download         Length: 945 bp        

>NTDB_id=958627 ACI3L8_RS00365 WP_404971735.1 86115..87059(+) (ceuB) [Vibrio campbellii strain LB3]
ATGAACGCTAAAATTATCTTTATTTTCTTTTTATTGTGTATCGTTTCCATTTTTATTGGCGCCAATCCAATCGATTGGTC
ACTACTGCTGAAGATGGACGAAAGTGCTTGGTTGCCGATTACTGCTAGCAGACTTCCGAGGTTGGTTGCGTTGATTCTGA
CTGGGGCCGGCTTGGCGATGTGCGGCGTCATCTTGCAACACATCGTCAGAAATCGTTTTGTAGAGCCTGGGACTACCGGC
GGCCTAGATGCTGCCAAGCTTGGTATTTTGGTATCGATCGTCATGTTGCCAAACTCAGATAAGCTTGAGCGCATGATTTT
TGCTGTCGTATTTTGCTTTGCAGCAGGGCTCATTTACATCGCGATCGTACGAAAAATTAAATTCAGTAATTCAGCATTGG
TCCCAGTCATTGGACTGATGTTCGGCAGCGTATTGAGCGCAATCGCTGAATTTTACGCTTATCAAAATAACGTTCTCCAA
AGCATGTCTGGCTGGTTAATGGGAGACTTTTCTAAGGTCGTACAGGAACACTACGAGATCATTTACCTGATCTTACCCAC
CACTCTGTTGACCTACTTCTACGCAAATAAATTTACCGTCATGGGCATGGGAGAAGATGCAGCATCTAACTTGGGCATTA
ACTTCGCAACAACGGCAGCGTTAGGTCTGATGCTGGTTTCCGTGACCGTTGCTGTGACCGTCGTGACCGTCGGGGCAATT
CATTTTGTCGGTTTAGTGATCCCAAACCTTGTCGCACTAAAATATGGCGACCACCTGAAAAACACACTGCCAATCGTGGC
ATTGGGTGGCGCATCACTGCTTATTTTTTGCGATGTGATAAGCAGACTTGTGGTCTTTCCTTTTGAGGTTCCGATCGGCC
TTACCGCGAGTGCGATTGGTGGCCCCCTATTTCTTGTATTGCTCCTTAAAGGGGCACGTGCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.791

94.586

0.433