Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACI3L5_RS13765 Genome accession   NZ_CP173389
Coordinates   3030777..3032156 (-) Length   459 a.a.
NCBI ID   WP_045369724.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3025777..3037156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS13745 (ACI3L5_13745) - 3026222..3027073 (+) 852 WP_005530294.1 hypothetical protein -
  ACI3L5_RS13750 (ACI3L5_13750) - 3027138..3027347 (-) 210 WP_005439528.1 DUF1127 domain-containing protein -
  ACI3L5_RS13755 (ACI3L5_13755) - 3027447..3028376 (+) 930 WP_077200232.1 LysR substrate-binding domain-containing protein -
  ACI3L5_RS13760 (ACI3L5_13760) fusA 3028473..3030560 (-) 2088 WP_005530296.1 elongation factor G -
  ACI3L5_RS13765 (ACI3L5_13765) radA/sms 3030777..3032156 (-) 1380 WP_045369724.1 DNA repair protein RadA Machinery gene
  ACI3L5_RS13770 (ACI3L5_13770) - 3032308..3034656 (+) 2349 WP_404971401.1 PilZ domain-containing protein -
  ACI3L5_RS13775 (ACI3L5_13775) serB 3034709..3035689 (-) 981 WP_038891096.1 phosphoserine phosphatase -
  ACI3L5_RS13780 (ACI3L5_13780) - 3035781..3036386 (+) 606 WP_012128802.1 YtjB family periplasmic protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49305.72 Da        Isoelectric Point: 7.4131

>NTDB_id=958598 ACI3L5_RS13765 WP_045369724.1 3030777..3032156(-) (radA/sms) [Vibrio campbellii strain LB10]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCLLSSQMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVNNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=958598 ACI3L5_RS13765 WP_045369724.1 3030777..3032156(-) (radA/sms) [Vibrio campbellii strain LB10]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTCCCACGTTGGCAGGGGCAGTGTAATGCGTG
TGGTGCATGGAACACGATTACTGAAGTTCGTATTGCTGCATCGCCAACGGTAGCACGCAACGAACGCTTATCTGGTTACG
CAGGCTCAGCAACGGAATCAAAAGTTCAAACCCTGTCAGAGATTGATCTGCAAGAAGTGCCCCGTTTTACGAGTGGCTTT
AAAGAGCTAGACCGAGTACTTGGTGGTGGTGTGGTTCCGGGCGCTGCGATTCTTATCGGTGGTAACCCCGGCGCAGGTAA
GTCGACTTTGCTTTTGCAAACCATGTGTCTGTTGTCTTCGCAAATGCCTACTCTCTATGTGACGGGTGAGGAATCGCTCC
AGCAAGTGGCAATGCGTGCTTCACGACTTGGGTTGCCAAAAGAGCACCTGAAGATGTTGTCGGAAACAAACGTCGACAAG
ATTTGCCAAATTGCAGAGAAAGAACAGCCGCGCATTATGGTGATTGACTCGATTCAGGTAATGCACGTGTCTGATGTTCA
GTCGTCGCCGGGGAGTGTCGCTCAGGTACGTGAATCGGCAACCGCGCTGACGCGTTATGCAAAGCAAAATAATGTGGCCG
TCTTTATTGTTGGTCACGTAACAAAAGATGGTACCCTTGCCGGCCCTAAAGTACTTGAGCACATTATTGACTGTTCAGTT
CTACTCGATGGTGGTACTGATAGCCGCTTCCGAACCTTACGTAGCCACAAAAACCGTTTTGGTGCGGTGAATGAACTTGG
CGTCTTTGCCATGACGGGGCAGGGACTGAAAGAGGTCAATAACCCTTCGGCGATTTTCCTTTCCCGCGGTGAAGAAGAGA
CGTCGGGTTCGTCCGTTATGGTGGTGTGGGAAGGTACGCGCCCTCTATTAGTAGAGATTCAAGCACTGGTGGACTACTCA
CAATTGGCAAACCCACGTCGCGTCGCGGTGGGCCTAGAACAAAACCGTCTGTCTTTATTATTGGCGGTGCTGCATAAGCA
CGGTGGCCTACAAATGGCCGATCAAGATGTGTTTGTGAATGTCGTTGGTGGTGTAAAAGTCACAGAGACCAGTGCTGACC
TTGCGCTAGTTATGGCGCTTTTGTCGAGTTTTCGCGATCGTCCACTACCAAAAGATGTGGTGGTGTTTGGTGAGGTTGGC
TTAGCGGGAGAGATTCGCCCAGTGCCGAGTGGCCAAGAGCGTTTGAATGAAGCATTCAAGCACGGCTTTAAGAAAGCGAT
CGTACCAGCAGCGAATATGCCAAAGGGCGGTATTCCTGGTATGCAAATCCATGGCGTTAAAAAACTGTCGGAGGCTATCG
AAGCATTTGATGAGTTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.711

99.346

0.464
  radA Streptococcus mitis SK321

44.079

99.346

0.438
  radA Streptococcus pneumoniae Rx1

43.516

99.129

0.431
  radA Streptococcus pneumoniae D39

43.516

99.129

0.431
  radA Streptococcus pneumoniae R6

43.516

99.129

0.431
  radA Streptococcus pneumoniae TIGR4

43.516

99.129

0.431
  radA Streptococcus mitis NCTC 12261

43.516

99.129

0.431