Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACI3L5_RS07990 Genome accession   NZ_CP173389
Coordinates   1748180..1749124 (-) Length   314 a.a.
NCBI ID   WP_045368848.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1743180..1754124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS07975 (ACI3L5_07975) - 1743860..1746052 (-) 2193 WP_404973645.1 TonB-dependent receptor -
  ACI3L5_RS07980 (ACI3L5_07980) - 1746191..1747174 (-) 984 WP_404973646.1 siderophore ABC transporter substrate-binding protein -
  ACI3L5_RS07985 (ACI3L5_07985) - 1747230..1748183 (-) 954 WP_404973647.1 iron chelate uptake ABC transporter family permease subunit -
  ACI3L5_RS07990 (ACI3L5_07990) ceuB 1748180..1749124 (-) 945 WP_045368848.1 ABC transporter permease Machinery gene
  ACI3L5_RS07995 (ACI3L5_07995) - 1749535..1751670 (+) 2136 WP_404973648.1 condensation domain-containing protein -
  ACI3L5_RS08000 (ACI3L5_08000) - 1751849..1752592 (-) 744 WP_404973669.1 metallophosphoesterase family protein -
  ACI3L5_RS08005 (ACI3L5_08005) - 1752684..1753562 (-) 879 WP_079402363.1 AEC family transporter -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33733.54 Da        Isoelectric Point: 8.4615

>NTDB_id=958583 ACI3L5_RS07990 WP_045368848.1 1748180..1749124(-) (ceuB) [Vibrio campbellii strain LB10]
MNAKIIFVFFLLCIVSIFIGANPIDWSLLLKMDENAWLPITASRLPRLVALILTGAGLAMCGVILQHIVRNRFVEPGTTG
GLDAAKLGILVSIVMLPNSDKLERMIFAVVFCFAAGLIYIAIVRKIKFSNSALVPVIGLMFGSVLSAIAEFYAYQNNVLQ
SMSGWLMGDFSKVVQEHYEIIYLILPTTLLTYFYANKFTVMGMGEDAASNLGINFATTAALGLMLVSVTVAVTVVTVGAI
HFVGLVIPNLVALKYGDHLKNTLPIVALGGASLLIFCDVISRLVVFPFEVPIGLTASAIGGTLFLVLLLKGARA

Nucleotide


Download         Length: 945 bp        

>NTDB_id=958583 ACI3L5_RS07990 WP_045368848.1 1748180..1749124(-) (ceuB) [Vibrio campbellii strain LB10]
ATGAACGCTAAAATTATCTTTGTTTTCTTTTTATTGTGTATCGTTTCCATTTTTATTGGCGCCAATCCAATCGATTGGTC
ACTACTGCTGAAGATGGACGAAAATGCTTGGTTGCCGATTACTGCTAGCAGACTTCCGAGGTTGGTTGCGTTGATTCTAA
CAGGGGCCGGCTTGGCGATGTGCGGCGTCATCTTGCAACACATCGTCAGAAATCGTTTTGTAGAGCCTGGGACTACCGGC
GGCCTAGATGCTGCCAAGCTTGGTATTTTGGTATCGATCGTCATGTTGCCAAATTCAGATAAGCTTGAGCGCATGATTTT
TGCTGTCGTCTTTTGCTTTGCAGCAGGGCTCATTTACATCGCGATCGTACGAAAAATTAAATTCAGTAATTCAGCATTGG
TCCCAGTCATTGGACTGATGTTTGGCAGCGTATTGAGCGCAATCGCTGAATTTTACGCTTATCAAAATAACGTTCTTCAA
AGCATGTCTGGCTGGTTAATGGGAGACTTTTCTAAGGTCGTACAGGAACACTACGAGATCATTTACCTGATCTTACCCAC
CACTCTGTTGACCTACTTCTACGCAAATAAATTTACCGTCATGGGCATGGGAGAAGATGCAGCATCTAACTTGGGCATTA
ACTTCGCAACAACGGCAGCGTTAGGTCTGATGCTGGTTTCCGTGACCGTTGCTGTGACCGTCGTGACCGTCGGGGCAATT
CATTTTGTCGGTTTAGTGATCCCAAACCTTGTCGCACTAAAATATGGCGACCACCTGAAAAACACACTGCCAATCGTGGC
ATTGGGTGGCGCATCACTGCTTATTTTTTGCGATGTGATAAGCAGACTTGTGGTCTTTCCTTTTGAGGTTCCGATCGGCC
TTACCGCGAGTGCGATTGGTGGCACCCTATTTCTTGTATTGCTCCTTAAAGGAGCACGTGCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.791

94.586

0.433