Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACI3L7_RS10790 Genome accession   NZ_CP173387
Coordinates   2350324..2351268 (-) Length   314 a.a.
NCBI ID   WP_404969654.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2345324..2356268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS10775 (ACI3L7_10775) - 2346004..2348196 (-) 2193 WP_404969652.1 TonB-dependent receptor -
  ACI3L7_RS10780 (ACI3L7_10780) - 2348335..2349318 (-) 984 WP_012127837.1 siderophore ABC transporter substrate-binding protein -
  ACI3L7_RS10785 (ACI3L7_10785) - 2349374..2350327 (-) 954 WP_404969653.1 iron chelate uptake ABC transporter family permease subunit -
  ACI3L7_RS10790 (ACI3L7_10790) ceuB 2350324..2351268 (-) 945 WP_404969654.1 ABC transporter permease Machinery gene
  ACI3L7_RS10795 (ACI3L7_10795) - 2351679..2353814 (+) 2136 WP_404969655.1 condensation domain-containing protein -
  ACI3L7_RS10800 (ACI3L7_10800) - 2354015..2354752 (-) 738 WP_404969656.1 metallophosphoesterase family protein -
  ACI3L7_RS10805 (ACI3L7_10805) - 2354844..2355722 (-) 879 WP_182053243.1 AEC family transporter -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33687.49 Da        Isoelectric Point: 8.3258

>NTDB_id=958527 ACI3L7_RS10790 WP_404969654.1 2350324..2351268(-) (ceuB) [Vibrio campbellii strain LB135]
MNAKIIFVFFLLCIVSICIGANPIDWSLLLKMDESAWLPITASRLPRLVALILTGAGLAMCGVILQHIVRNRFVEPGTTG
GLDAAKLGILVSIVMLPNSDKLERMIFAVVFCFAAGLIYIAIVRKIKFSNSALVPVIGLMFGSVLSAIAEFYAYQNNVLQ
SMSGWLMGDFSKVVQEHYEIIYLILPTTLLTYFYANKFTVMGMGEDAASNLGINFATTAALGLMLVSVTVAVTVVTVGAI
HFVGLVIPNLVALKYGDQLKNTLPIVALGGASLLIFCDVISRLVVFPFEVPIGLTASAIGGTLFLVLLFKGARA

Nucleotide


Download         Length: 945 bp        

>NTDB_id=958527 ACI3L7_RS10790 WP_404969654.1 2350324..2351268(-) (ceuB) [Vibrio campbellii strain LB135]
ATGAACGCTAAAATTATCTTTGTTTTCTTTTTATTGTGTATCGTTTCCATTTGTATTGGCGCCAATCCAATCGATTGGTC
ACTACTGCTGAAGATGGACGAAAGTGCTTGGTTGCCGATTACTGCTAGCAGACTTCCGAGGTTGGTTGCGTTGATTCTGA
CAGGAGCCGGCTTGGCGATGTGCGGTGTCATCTTGCAACACATCGTCAGAAATCGTTTTGTAGAGCCTGGGACTACCGGC
GGCCTAGATGCTGCCAAGCTTGGTATTTTGGTATCGATCGTCATGTTGCCAAACTCAGATAAGCTTGAGCGCATGATTTT
TGCTGTCGTATTTTGCTTTGCAGCAGGGCTCATTTACATCGCGATCGTACGAAAAATTAAATTCAGTAATTCAGCATTGG
TCCCAGTCATTGGACTGATGTTCGGCAGCGTTTTGAGCGCAATCGCTGAATTTTACGCTTATCAAAATAACGTTCTCCAA
AGCATGTCTGGCTGGTTAATGGGAGACTTTTCTAAGGTCGTACAGGAACACTACGAGATCATTTACCTGATCTTACCCAC
CACTCTGTTGACCTACTTCTACGCAAATAAATTTACCGTCATGGGCATGGGAGAAGATGCAGCATCTAACTTGGGCATCA
ACTTCGCAACAACGGCAGCGTTAGGTCTGATGCTGGTTTCCGTGACCGTTGCTGTGACCGTCGTGACCGTCGGGGCAATT
CATTTTGTCGGTTTAGTGATCCCAAACCTTGTCGCACTAAAATATGGCGACCAACTGAAAAACACACTGCCAATCGTGGC
ATTGGGTGGCGCATCACTGCTTATTTTTTGCGATGTGATAAGCAGACTTGTGGTCTTTCCTTTTGAGGTTCCGATCGGCC
TTACCGCGAGTGCGATTGGCGGCACCCTATTTCTTGTATTGCTCTTTAAAGGAGCACGTGCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.118

94.586

0.427