Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACI3L7_RS01705 Genome accession   NZ_CP173387
Coordinates   356074..357549 (+) Length   491 a.a.
NCBI ID   WP_081234492.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351074..362549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS01680 (ACI3L7_01680) - 352195..353160 (+) 966 WP_038891160.1 calcium/sodium antiporter -
  ACI3L7_RS01685 (ACI3L7_01685) kdsD 353196..354167 (+) 972 WP_404970160.1 arabinose-5-phosphate isomerase KdsD -
  ACI3L7_RS01690 (ACI3L7_01690) lptC 354258..354821 (+) 564 WP_005535416.1 LPS export ABC transporter periplasmic protein LptC -
  ACI3L7_RS01695 (ACI3L7_01695) lptA 354802..355296 (+) 495 WP_005432860.1 lipopolysaccharide transport periplasmic protein LptA -
  ACI3L7_RS01700 (ACI3L7_01700) lptB 355298..356023 (+) 726 WP_005432855.1 LPS export ABC transporter ATP-binding protein -
  ACI3L7_RS01705 (ACI3L7_01705) rpoN/rpoN1 356074..357549 (+) 1476 WP_081234492.1 RNA polymerase factor sigma-54 Machinery gene
  ACI3L7_RS01710 (ACI3L7_01710) hpf 357573..357860 (+) 288 WP_005432838.1 ribosome hibernation promoting factor -
  ACI3L7_RS01715 (ACI3L7_01715) ptsN 357863..358309 (+) 447 WP_005432846.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACI3L7_RS01720 (ACI3L7_01720) rapZ 358324..359187 (+) 864 WP_005432858.1 RNase adapter RapZ -
  ACI3L7_RS01725 (ACI3L7_01725) - 359190..359465 (+) 276 WP_005432843.1 HPr family phosphocarrier protein -
  ACI3L7_RS01730 (ACI3L7_01730) mgtE 359632..360987 (+) 1356 WP_050913691.1 magnesium transporter -
  ACI3L7_RS01735 (ACI3L7_01735) pmbA 361071..362414 (-) 1344 WP_010450446.1 metalloprotease PmbA -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 55102.73 Da        Isoelectric Point: 4.3082

>NTDB_id=958473 ACI3L7_RS01705 WP_081234492.1 356074..357549(+) (rpoN/rpoN1) [Vibrio campbellii strain LB135]
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHDEPQVNGEDKSASESADNSANEANDAS
EPDLPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALDDDMPVYQGETTESLHDYLMWQLDLTPFSETDRTIALAI
IDAIDDYGYLTLSPEEIHESFDNEEVELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLATFPEDTPWLAEAKMVLSDHI
DHLGNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGKWTVSINPDSIPKLKVNQQYA
QLGKGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDVALDVDMHESTISRVTT
QKFMHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLG
IAPSSQRKRLL

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=958473 ACI3L7_RS01705 WP_081234492.1 356074..357549(+) (rpoN/rpoN1) [Vibrio campbellii strain LB135]
ATGAAACCTTCATTACAACTCAAGCTAGGTCAACAGTTAGCCATGACGCCACAGCTGCAGCAAGCGATTCGTTTGTTGCA
ATTGTCGACGCTCGATCTTCAACAAGAAATCCAAGAAGCGTTGGACTCCAACCCGCTACTGGAAGTTGAAGAAGGCCACG
ATGAGCCTCAAGTAAACGGTGAAGACAAATCAGCGTCTGAATCTGCTGATAACAGTGCGAACGAAGCTAACGATGCCTCA
GAACCCGACCTTCCAGACAGCTCAGACGTGATTGAAAAATCTGAAATCAGCTCTGAGCTAGAAATTGATACCACTTGGGA
TGACGTATACAGCGCAAACACGGGCAGCACAGGCCTAGCGCTGGATGATGACATGCCCGTCTACCAAGGTGAGACCACTG
AATCGCTGCATGATTACCTTATGTGGCAGTTAGACTTAACGCCTTTCAGTGAAACCGACCGCACCATTGCCCTCGCGATC
ATCGATGCGATCGACGACTACGGCTACCTAACCCTATCCCCAGAAGAAATTCACGAGAGCTTCGACAACGAAGAAGTGGA
ATTGGATGAAGTAGAAGCGGTACGTAAGCGTATTCAGCAATTTGACCCGCTCGGTGTAGCCTCTCGCAATCTGCAAGAGT
GCCTATTGCTACAACTGGCAACTTTCCCTGAAGACACGCCATGGCTTGCTGAGGCGAAAATGGTGTTAAGCGATCACATC
GACCACCTTGGCAATCGTGACTACAAGCTGGTCATCAAAGAGACTAAGCTTAAAGAAGCGGACTTGCGTGAAGTATTGAA
GTTGATTCAACAACTTGACCCTCGCCCAGGTAGTCGTATCACACCCGATGACACTGAATACGTCATTCCGGATGTGTCCG
TATTTAAAGATCATGGTAAGTGGACCGTCTCCATAAACCCTGACAGCATTCCGAAACTAAAAGTAAATCAACAATATGCG
CAACTAGGCAAAGGAAACAGTGCGGATAGCCAGTACATTCGCAGCAATTTGCAAGAGGCAAAATGGCTGATTAAGAGCCT
AGAAAGCAGAAACGAGACGCTTCTCAAAGTTGCAAGATGTATTGTTGAACATCAACAAGATTTCTTCGAGTATGGTGAAG
AAGCCATGAAACCAATGGTGCTAAACGACGTAGCATTGGATGTGGACATGCATGAATCGACAATTTCTCGTGTAACAACA
CAGAAGTTTATGCATACCCCACGTGGCATTTTTGAATTGAAGTACTTCTTCTCTAGCCATGTTAGTACAGACAATGGTGG
AGAGTGTTCGTCCACAGCAATTCGCGCACTCATCAAAAAGTTGGTCGCAGCGGAGAATACCGCTAAGCCACTGAGTGATA
GCAAAATTGCTGCTCTTCTGGCTGACCAGGGGATTCAAGTCGCGAGACGTACGATAGCAAAATATCGTGAATCCTTGGGT
ATCGCCCCTTCGAGTCAGCGCAAACGCCTACTTTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(132-319)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(331-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

43.936

100

0.45